G80998


Basic Information

Item Value
gene id G80998
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 16081318 ~ 16086958 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU109073
CTGAAACGCCAGGTAgagaggagtgacgcgagccgagttaaaaatacagGCAGGTTTATTATAAGAAAGGTTAACAGGTTCTgctaacagaaaacaaacaataatctcaCCGATGACCAGAGACGTAGTCAAAGATACAGTCCAAGTTCTAAACCGGAAAACAGTCCAACCATATACCAAATCCAacaagggcaaaacaaaagacataaaccgaaAATCCAAACACAGagtcgtaacgagaaggcaaaaacagtAATCCAGAAAACGCTTAGTACGCAACATGAGTTGgcaatacctcgcggtgtttcCTTACAAATGGATGCCTTAAATACAGAATCTAGATAAGAATGAACCGGAAGTAATTTAGTAaacaggtgaatcagagcgtcggagcgtaacgtgattgggtGAATGTGAAGGGTTATTATTGATGTCATAATCtggggaattctgggaaatagagtccggtagtgtggaaggagagccAGGCTGCGTAACA
>TU109074
CTGAAACGCCAGGTAgagaggagtgacgcgagccgagttaaaaatacagGCAGGTTTATTATAAGAAAGGTTAACAGGTTCTgctaacagaaaacaaacaataatctcaCCGATGACCAGAGACGTAGTCAAAGATACAGTCCAAGTTCTAAACCGGAAAACAGTCCAACCATATACCAAATCCAacaagggcaaaacaaaagacataaaccgaaAATCCAAACACAGagtcgtaacgagaaggcaaaaacagtAATCCAGAAAACGCTTAGTACGCAACATGAGTTGgcaatacctcgcggtgtttcCTTACAAATGGATGCCTTAAATACAGAATCTAGATAAGAATGAACCGGAAGTAATTTAGTAaacaggtgaatcagagcgtcggagcgtaacgtgattgggtGAATGTGAAGGGTTATTATTGATGTCATAATCtggggaattctgggaaatagagtccggtagtgtggaaggagagccAGGCTGCGTAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109073 True 499 lncRNA 0.42 2 16081318 16086958
TU109074 False 499 lncRNA 0.42 2 16081318 16086958

Neighbor

gene id symbol gene type direction distance location
LOC103040417 ctsb,LOC108433939,LOC107733172,LOC102299207,LOC107752788 coding upstream 133324 15939403 ~ 15947994 (+)
kcnk18 NA coding upstream 160592 15897524 ~ 15920726 (+)
pla2g4f NA coding upstream 190230 15864483 ~ 15891088 (+)
eno4 NA coding upstream 377200 15682373 ~ 15704118 (+)
LOC111193204 NA coding upstream 539032 15507380 ~ 15542286 (+)
LOC111193130 NA coding downstream 339567 16426525 ~ 16440795 (+)
dnal1 dnal1 coding downstream 376943 16463901 ~ 16467758 (+)
tedc1 NA coding downstream 384897 16471855 ~ 16486398 (+)
tmem121 tmem121a,tmem121,LOC107594772,LOC107674105,LOC107592808,LOC107697696 coding downstream 431258 16518216 ~ 16539460 (+)
ccdc28a ccdc28a coding downstream 499229 16586187 ~ 16593573 (+)
LOC111193206 NA non-coding upstream 48454 16023825 ~ 16032864 (+)
G80942 LOC108433938,LOC108269891,LOC105908308,LOC107674111,LOC105908357,LOC107733184,LOC107592771,LOC107752785,LOC107697773 non-coding upstream 118213 15961507 ~ 15963105 (+)
LOC111193205 NA non-coding upstream 352056 15726594 ~ 15729262 (+)
G80887 NA non-coding upstream 360309 15719571 ~ 15721009 (+)
G80881 NA non-coding upstream 370155 15709585 ~ 15711163 (+)
G81011 NA non-coding downstream 77522 16164480 ~ 16170976 (+)
G81017 NA non-coding downstream 180349 16267307 ~ 16267608 (+)
G81018 NA non-coding downstream 182115 16269073 ~ 16273199 (+)
G81048 fut8,LOC108433921 non-coding downstream 305344 16392302 ~ 16395703 (+)
G81061 LOC108433921,LOC107733188 non-coding downstream 316374 16403332 ~ 16404968 (+)
G80857 NA other upstream 497987 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 877531 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 1246239 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 1278286 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 1282714 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 1940349 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 2373165 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 2424664 18511622 ~ 18520947 (+)
G81704 NA other downstream 2843280 18930238 ~ 18930754 (+)
G81761 NA other downstream 3578778 19665736 ~ 19666047 (+)

Expression


Co-expression Network