G81074


Basic Information

Item Value
gene id G81074
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 16569003 ~ 16662616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU109219
ACTAgctttattagaaataaaacaaatatttaacagTCCTATTCCAACATACTAGAgctattaataatgtttttaatgaaacaatattttaaaattcctTGTTCATCCCAATATTACAAGTGCAAACATTCAGTCCATATCATTCTCATCAACAGCTCGGTGTATTACGATCATATTAACCACCAGGTGTGTGGAAACGAGCGTGTTAACATCTGAAACTCACTGTAACATCACTTTATCTTTCAACCTTCACAATTACCAGTTCAGGACCATTTAATAATTACATATCAATAGAATAgtgaacaaaaataataatattaaccaACAATATTATAAACTAACctacagagaaagagattaaATTTGAATCACAGGCAATCGGGGACTTCACTCCGGTGGTCTCCATTCCCTTTAATGGTGAGGAGAGGATCTGAAGccgcttttccactgcaggtcCATTCTTGTGAATTTTCCCAAGTGTCGATTCAGCATGAAACGATTACGAACTGGGCTGAGTACAATAACTGTATTTATGGACACAGAACCATACAGTAGGAGGGGCTTAAAGACTGAGGGATGTGCCTGTTGGTTAGCTGGGCCAGGCCAGAGCCTGATTGGTAGAGCGATGTAGTGATGTGGGTTGAGGCCCAAAGCTGTTCTGTGCATTTCCAGGTCCTGAGTAAGCAAACATTAAGCGACACAGCAAATGGAAACTGTAACCAGTGGAAAAGCGGCTAAAAGATGAAATTCCTTTAACAAAGAGTCACATGTTTCTctagacgaaaaaaaaaaaaccaacaaaaacgcacaagaagaaaacatttatatcaccacgtaaatataatgttttttaatgatgagTCTGTGCAGTTTCAGACCTGTTTTCAGAGTGGAAGAGTCATACCTACAAGTCATCACTACATTAAAATCAAATCCATTTTTTATGCCCAATAAAACCCTACTCAGTGTGAAAGGGCCTGAAGTTCACATGTTGACCAGGTTAAGAGAAGCTAATAAACAGCCTCTCTAACAGCGTATAAAGCGTACAGGCAATCAGGACAGCAGTGACCCCAGCCCCTCGTACAGTTCTCACGCATGGGGGTGAATATCTGATTGTACAAGAGGCATCgagtttatgtttatatttatatttacaaaatagCTTAAAAGCTACAACAATAAGGCACAGCGGCAGTGAATAAATCATCACTAAAGCTCTCTAAACAAAATTTCTTTGCCCTTtcgaaatgtgtgtgtgtctgtgtgtgtgagagagagtgtgagagagagagagtgtgagagagagagagaga
>TU109220
ACTAgctttattagaaataaaacaaatatttaacagTCCTATTCCAACATACTAGAgctattaataatgtttttaatgaaacaatattttaaaattcctTGTTCATCCCAATATTACAAGTGCAAACATTCAGTCCATATCATTCTCATCAACAGCTCGGTGTATTACGATCATATTAACCACCAGGTGTGTGGAAACGAGCGTGTTAACATCTGAAACTCACTGTAACATCACTTTATCTTTCAACCTTCACAATTACCAGTTCAGGACCATTTAATAATTACATATCAATAGAATAgtgaacaaaaataataatattaaccaACAATATTATAAACTAACctacagagaaagagattaaATTTGAATCACAGGCAATCGGGGACTTCACTCCGGTGGTCTCCATTCCCTTTAATGGTGAGGAGAGGATCTGAAGccgcttttccactgcaggtcCATTCTTGTGAATTTTCCCAAGTGTCGATTCAGCATGAAACGATTACGAACTGGGCTGAGTACAATAACTGTATTTATGGACACAGAACCATACAGTAGGAGGGGCTTAAAGACTGAGGGATGTGCCTGTTGGTTAGCTGGGCCAGGCCAGAGCCTGATTGGTAGAGCGATGTAGTGATGTGGGTTGAGGCCCAAAGCTGTTCTGTGCATTTCCAGGTCCTGAGTAAGCAAACATTAAGCGACACAGCAAATGGAAACTGTAACCAGTGGAAAAGCGGCTAAAAGATGAAATTCCTTTAACAAAGAGTCACATGTTTCTctagacgaaaaaaaaaaaaccaacaaaaacgcacaagaagaaaacatttatatcaccacgtaaatataatgttttttaatgatgagTCTGTGCAGTTTCAGACCTGTTTTCAGAGTGGAAGAGTCATACCTACAAGTCATCACTACATTAAAATCAAATCCATTTTTTATGCCCAATAAAACCCTACTCAGTGTGAAAGGGCCTGAAGTTCACATGTTGACCAGGTTAAGAGAAGCTAATAAACAGCCTCTCTAACAGCGTATAAAGCGTACAGGCAATCAGGACAGCAGTGACCCCAGCCCCTCGTACAGTTCTCACGCATGGGGGTGAATATCTGATTGTACAAGAGGCATCgagtttatgtttatatttatatttacaaaatagCTTAAAAGCTACAACAATAAGGCACAGCGGCAGTGAATAAATCATCACTAAAGCTCTCTAAACAAAATTTCTTTGCCCTTtcgaaatgtgtgtgtgtctgtgtgtgtgagagagagtgtgagagagagagagagagagagagagagagaaagagagaga
>TU109222
ACTAgctttattagaaataaaacaaatatttaacagTCCTATTCCAACATACTAGAgctattaataatgtttttaatgaaacaatattttaaaattcctTGTTCATCCCAATATTACAAGTGCAAACATTCAGTCCATATCATTCTCATCAACAGCTCGGTGTATTACGATCATATTAACCACCAGGTGTGTGGAAACGAGCGTGTTAACATCTGAAACTCACTGTAACATCACTTTATCTTTCAACCTTCACAATTACCAGTTCAGGACCATTTAATAATTACATATCAATAGAATAgtgaacaaaaataataatattaaccaACAATATTATAAACTAACctacagagaaagagattaaATTTGAATCACAGGCAATCGGGGACTTCACTCCGGTGGTCTCCATTCCCTTTAATGGTGAGGAGAGGATCTGAAGccgcttttccactgcaggtcCATTCTTGTGAATTTTCCCAAGTGTCGATTCAGCATGAAACGATTACGAACTGGGCTGAGTACAATAACTGTATTTATGGACACAGAACCATACAGTAGGAGGGGCTTAAAGACTGAGGGATGTGCCTGTTGGTTAGCTGGGCCAGGCCAGAGCCTGATTGGTAGAGCGATGTAGTGATGTGGGTTGAGGCCCAAAGCTGTTCTGTGCATTTCCAGGTCCTGAGTAAGCAAACATTAAGCGACACAGCAAATGGAAACTGTAACCAGTGGAAAAGCGGCTAAAAGATGAAATTCCTTTAACAAAGAGTCACATGTTTCTctagacgaaaaaaaaaaaaccaacaaaaacgcacaagaagaaaacatttatatcaccacgtaaatataatgttttttaatgatgagTCTGTGCAGTTTCAGACCTGTTTTCAGAGTGGAAGAGTCATACCTACAAGTCATCACTACATTAAAATCAAATCCATTTTTTATGCCCAATAAAACCCTACTCAGTGTGAAAGGGCCTGAAGTTCACATGTTGACCAGGTTAAGAGAAGCTAATAAACAGCCTCTCTAACAGCGTATAAAGCGTACAGGCAATCAGGACAGCAGTGACCCCAGCCCCTCGTACAGTTCTCACGCATGGGGGTGAATATCTGATTGTACAAGAGGCATCgagtttatgtttatatttatatttacaaaatagCTTAAAAGCTACAACAATAAGGCACAGCGGCAGTGAATAAATCATCACTAAAGCTCTCTAAACAAAATTTCTTTGCCCTTtcgaaatgtgtgtgtgtctgtgtgtgtgagagagagtgtgagagagagagagagtgtgagagagagagagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109219 False 1313 lncRNA 0.39 2 16569003 16662616
TU109220 True 1321 lncRNA 0.39 2 16569003 16654558
TU109222 False 1315 lncRNA 0.39 2 16569003 16662616

Neighbor

gene id symbol gene type direction distance location
tmem121 tmem121a,tmem121,LOC107594772,LOC107674105,LOC107592808,LOC107697696 coding upstream 29543 16518216 ~ 16539460 (+)
tedc1 NA coding upstream 82605 16471855 ~ 16486398 (+)
dnal1 dnal1 coding upstream 101245 16463901 ~ 16467758 (+)
LOC111193130 NA coding upstream 128208 16426525 ~ 16440795 (+)
LOC103040417 ctsb,LOC108433939,LOC107733172,LOC102299207,LOC107752788 coding upstream 621009 15939403 ~ 15947994 (+)
LOC103021824 efr3b,LOC107697777,LOC107752767,LOC107592778 coding downstream 25302 16687918 ~ 16713041 (+)
LOC103022442 LOC108433935,LOC100537549,LOC107592775,LOC107752809,LOC105908160 coding downstream 58609 16721225 ~ 16729066 (+)
LOC103031040 fam150b,LOC108425626 coding downstream 98207 16760823 ~ 16767006 (+)
sh3yl1 sh3yl1,LOC107733179,LOC107594817,LOC107674108 coding downstream 119921 16782537 ~ 16838704 (+)
LOC103043735 id2,id2a,LOC107579075,LOC107707685,LOC106566577,LOC107655320 coding downstream 854356 17516972 ~ 17519541 (+)
G81083 NA non-coding upstream 42999 16525484 ~ 16526004 (+)
G81062 NA non-coding upstream 94349 16406264 ~ 16474654 (+)
G81061 LOC108433921,LOC107733188 non-coding upstream 164035 16403332 ~ 16404968 (+)
G81048 fut8,LOC108433921 non-coding upstream 173300 16392302 ~ 16395703 (+)
G81018 NA non-coding upstream 295804 16269073 ~ 16273199 (+)
G81124 NA non-coding downstream 16032 16678648 ~ 16681932 (+)
G81190 NA non-coding downstream 54379 16716995 ~ 16719435 (+)
G81197 NA non-coding downstream 67204 16729820 ~ 16730174 (+)
G81220 NA non-coding downstream 177608 16840224 ~ 16845728 (+)
G81224 NA non-coding downstream 201495 16864111 ~ 16864542 (+)
G80857 NA other upstream 985672 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 1365216 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 1733924 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 1765971 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 1770399 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 1364691 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 1797507 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 1849006 18511622 ~ 18520947 (+)
G81704 NA other downstream 2267622 18930238 ~ 18930754 (+)
G81761 NA other downstream 3003120 19665736 ~ 19666047 (+)

Expression


Co-expression Network