G81106


Basic Information

Item Value
gene id G81106
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 16619583 ~ 16621422 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU109267
ttcatgtttttacattgtattaatCTAACAAATCACATTTATGGGTTTTTAATTAGAATTTTAgagttacaaaaataaaatatttgaataacATCATCTTATGATTAGtattaaaccattaaaaccaTCAGTACAGTGAGTTGTGCTGCGTTCCCTTTTCCTCGGATGTGGAAGCTGTGAATAGTAAATAacattttggatttattttcatttatttcaaacaTACGTTTACAGATTTAACAGTAGACTAAATTGAGGTGGGACTGCAGGAATGCTAATGTGTAAATTTAAGAAGAATAAGAACTAATTTAATGACCCACATTTTGCactgtaaatgttttagtttgagTTTGTGTGCAAAAATTGTATCAAATGTTCATTTGAAATAACAACAAGCTTCCTGTAAAAGCTGTACAATATTGGTGTTCTGCTTTTTGCTACGCTAAACCTTAACGTTAGGTATAaagttacattcaatagagaatccaGTTGTAGGTTGGTTTAAAATCTATGAGGCTTCAACAGTGGACCATCTAAGTAAATTGTTACCAACATTCAGATATTATCTATTACTTTTAGCATTGTCCTGGTTATCATGAATAGCAAATGGATGATACGTATTATTGCGTATTTTGTGCATCTAAACAGCCTGTAATCATCTCCACATCTGAGTGTAAATGGAAGGCAGCATAATTACAGTCAACAatctataaaacacaatatCTGAATACAATTACCATTTTGCATTCATTCTACATAAATCAAAGAAGATTCTATATTATGTGCTGAACACAACCCATCCTTTAAACCATCCTTCAACCCATCCTTTAACATCATCATTTAACCCATCCTTTAACCCATCCATGCAGTGAACAGTGAAACAGTAATAGCGAGTCCGGAGCAGTGGGCAGCGTCACTGTAGAATCCGGGGAGCAGTGGGGGTTAAGGGTTTCAGCAGTGGTGTTTGTTATTCCCTGTGTTGTGTTATACCCACACAACCCTGTGTTATATCCGAACGACCCTTTGTTATTCCCGCACAAGACCCTGTGTTATATCAGAACGACTCTTTGTTTTTCCCGCACAAGACCCTGTGTTACACTTTCAAGACCTTATGTTATACCTGCACATCCCTGTGTTGCATTATACCTGCATTTCCCTGTGTTGTGTTATACCTGCACGTCCCTGTGTTGTGTTATACCTGCATTTCCCTGTGTTGTGTTTTACCTGCACATCCCTGTGTTGTGTTATACCTGCATTTTCCTGTGTTGTGTTATACCTGCATTTTCCTGTGTTGTGTTATACCTGCATTTCCCTGTGTTGTGTTATACCTGCACATCCCTGTGTTGAGTTATACCCGTACATCCCTGTGTTGTGTTATACCTGCACGTTACTGTGTTGTGTTATATCTGCAAACCCCTGTGTTGAGTTATACGTTACTGTGTTGTGTTATATCTGCAAACCCCTGTGTTGAGTTATACCCAAACATCCCTGTGTTGTGTTATATCTGCAAATCCCTGTGTTGTGTTATATCTGCAAATCCCTTTGTTGTGTTATATCTGCACATTCCAGTGTTATGTTAAAGCTGCAAAGCCCTGTGTTATGTTAAAGCTGCAAGAATCTGTGTTATACCGGCACATCCATGTGCTGTGTTATACACGCACAACCCTGTGTTATACCCACACACCACTGTGTTATACCCGCATGTCCCACGGTGTATAAGTCCCTGCTTCAGGAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109267 True 1737 lncRNA 0.38 3 16619583 16621422

Neighbor

gene id symbol gene type direction distance location
ect2l NA coding upstream 11126 16594547 ~ 16608457 (+)
ccdc28a ccdc28a coding upstream 26010 16586187 ~ 16593573 (+)
tmem121 tmem121a,tmem121,LOC107594772,LOC107674105,LOC107592808,LOC107697696 coding upstream 80123 16518216 ~ 16539460 (+)
tedc1 NA coding upstream 133185 16471855 ~ 16486398 (+)
dnal1 dnal1 coding upstream 151825 16463901 ~ 16467758 (+)
LOC103021824 efr3b,LOC107697777,LOC107752767,LOC107592778 coding downstream 66496 16687918 ~ 16713041 (+)
LOC103022442 LOC108433935,LOC100537549,LOC107592775,LOC107752809,LOC105908160 coding downstream 99803 16721225 ~ 16729066 (+)
LOC103031040 fam150b,LOC108425626 coding downstream 139401 16760823 ~ 16767006 (+)
sh3yl1 sh3yl1,LOC107733179,LOC107594817,LOC107674108 coding downstream 161115 16782537 ~ 16838704 (+)
LOC103043735 id2,id2a,LOC107579075,LOC107707685,LOC106566577,LOC107655320 coding downstream 895550 17516972 ~ 17519541 (+)
G81105 NA non-coding upstream 1459 16617687 ~ 16618124 (+)
G81103 NA non-coding upstream 3435 16615202 ~ 16616148 (+)
G81083 NA non-coding upstream 93579 16525484 ~ 16526004 (+)
G81062 NA non-coding upstream 144929 16406264 ~ 16474654 (+)
G81061 LOC108433921,LOC107733188 non-coding upstream 214615 16403332 ~ 16404968 (+)
G81124 NA non-coding downstream 57226 16678648 ~ 16681932 (+)
G81190 NA non-coding downstream 95573 16716995 ~ 16719435 (+)
G81197 NA non-coding downstream 108398 16729820 ~ 16730174 (+)
G81220 NA non-coding downstream 218802 16840224 ~ 16845728 (+)
G81224 NA non-coding downstream 242689 16864111 ~ 16864542 (+)
G80857 NA other upstream 1036252 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 1415796 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 1784504 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 1816551 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 1820979 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 1405885 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 1838701 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 1890200 18511622 ~ 18520947 (+)
G81704 NA other downstream 2308816 18930238 ~ 18930754 (+)
G81761 NA other downstream 3044314 19665736 ~ 19666047 (+)

Expression


Co-expression Network