G81124


Basic Information

Item Value
gene id G81124
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 16678648 ~ 16681932 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU109287
ACCCAAACAGAAAAAGTGACTGTGCAGCAAAATAATCATTCAGAAATCCCCCTCCACCGTAAGGTATCAGCGTTTACATCATCTCTACCAGTACAGATCACATAGTGCAGTCCAGCATGATCAAATATGAGGCATGcagttaatataatattataataataataatttactttaacaGTCTGTACACACTATTTACTGGTGCTAATCAACTTCgattacaaaattattttttattttattattcaattattagATTATAATCCATCTGTAACAGCACCAAACTAAACACACTGCAGAGAGAATCACTGCAGACTAATCAATTGATTaatcaactaccaaaataattatCAGCTGCCGTCCTGTTATCTAGATGAAAATATGCAAAACCAAATTCAAttcattacttttatatttgaaCACAGCAAGTCaccaaaatatatttacagtgataaataaataaaaacaagaaaataaaaaataaataccgTAACAGAGAAAACAAGGCAACCCATCATATAACGCCCACAAAATGCTTCAAAACTGAAGTAATGCATGTTATTTTAAAGACAgactgtaaattatttatatatgtagatTACTacatacacactgtaaaaatagaAATGATGCTTACACTGCACATGAACAGAAAAGACAATTCCTTTATATAGTGTCTTACtttatattcatataaaaatatgttctgAATGTTCATGCAGTATatgtacacatgtgtaacagacTTATTGTACATTGTTGAAATTGGAATTGTGTCACATCCCAACGTTCTGGACTTTCTTTATTAGTGAGAAACTGACTCTAACTAAAGCTGCCCCAATCAGATCACTTAATTCCTGGTGTTAAATTAacagatctgtgtgttttgtatgcAGCAATCTCATTAGTTCTTTAGCTTCTCCACATCCTGCAGCTTCATCATACTTTGTATCATAcgtattatatgtatatatgtaaataaacttttattttcatcTCTTTCTTAGTTTAAGAACTGAAATTATAGAAATCCACGCTGATATAGTACATGAAAAACAGCACAATCAATGATAAcatgatatcatgatattttttctgtgtaaacAAATGTCATAAATCAGACTTTGAATCAGgcttaaaattatgattttaacaCAGTGTAGTGTAAAGTATAATCACACGTAAACATAACAATACATTACTCTTGGCAccgtaacccagAAAAACAGCCACACCCAGAAGGACATTTTAGAATTGTATGCTCTTAagaaatatttattgagctacacatacagaagtataACGCCAGACGTCTCAGAATGAAGTTGCAGAAGTTCCAAATGTTCCTCCTGTGATAATCTATTCCATGCCgctccaatattctcacacagttcttGCAGATTGTGAGGTaggggtggagtgttgataAAGCCTCCAATAGAAACGCATCCCACCCATTTTCTATAATTATGGATAGGTCTGGAGATGCAGCTCGACATGAATAGTATCTGCAGTGTCTTCAAGACTTAAAGCTCTTAATAcgacagcagcagtgtgtggacgagtattgtcctgttggaaaagAGCAccggttgcaggacctcattaatgtaAAGTTGGGCTTTTAAAAATGTGGTATTGTACCAAAGTTCACCCCACACAATGACACCAGACCTTTTGTGTGGGCTGGCGTACAGTTGTTGTAATGGTCTGTGTGCATGTAAGTCCTATGCTGTGCAGCTGTCTGCCAACGGTGCTGGCACAAACAGGATGAACCATGGAGGTCTTCACTTCTTGCTGAATGTCTGTAATCCTACAGTTGGATCACTCGGCACATGTCATGCACACGGCCAGTTCTAGCTCTCTGGGGTTGGTGTGGATCTCGCTGATCCTCCCTGATGTTGCTGCTGCACCTATTTTGGGGTTCTGTGTCTAAAGGCCAACTTATACCTCTGTCATATGTCGTAGCGCATCTCTCTGGTAATGTAACCACGAGTCACGTGACGTAGAGAGCTCGCAGGGGCTTTTTAAAAATTTGCCTTTaccacattctgtggtaaataaataagtccagaacaaataaatatgttcaacaACTCCAAATCAAGTCTGCTCGCGTTCTCTGCTGCTGTGCGGTCAGTtcattagcttaaagctagcattGTTCTAATTACGACTCTTAAATGATCTTGAAATttgaggatccagtgatgtttagGTAAACAAAACCCCAAACATGGGTATAAACAACATGCtgccgactacaaaatgacgacaTGACTGCAGTGGTCTATATGCCAATAAGACCAACCCTTTGACCTATGACCCCTCTGGAAGTCTTCCAGCTGTTGGAAATGCTTTAGAAATCTTCTCTGAGGACTACACGGCACTAGCACTTGCAACGGAGCCCACCTACATAGATACAGAAATAAGCCCCGCCCTGCTTAGGTCACATGCACTGCCGAGCGTGAAACTTTAATGAGCCACATTGTCTCACAATGTCAAGCCCACACATGAAATTTTATTCCTTTATGCTGATTTCTTCTGGGTGCAGATGTTTTTAACGGTGAGTCAAgtttagaatattttatgtttataaaatattttataaagatTACAGCAGTGATCCATTTATAGCAAATGTAACCAGGTAGAACTCCATGGACTACAAGTAGAGCTGATAAATGTACACTATGTTCTTTACATTCTTCTGTGTGCGTGTATTTTACAGCGTACTCCACAGAACACCTGTAACGGTAATTTACACTTTTATACAGAACTTTAATAAACCTACGTTCTCTTGGTCTGagaggtgagagtgagagactgTGGGGGTTCCCCCTGTGTTCGAGTCTGTAGAGAGTTGTTGCTCCTCGTGTATACAAGGTTTCTGCGTTAACTCCTACTTGATGTTTTTGAGCAGAGAGGTGCGAGCGTTCACCACAGCTTTAAAAGCGTCTTCGCTGCCTGGAGCCACGCACTTATCCGGGTGCAGCAGAACAGCCAACTTCCTGTATGCCTTGTTGACTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109287 True 3028 lncRNA 0.38 2 16678648 16681932

Neighbor

gene id symbol gene type direction distance location
ect2l NA coding upstream 70191 16594547 ~ 16608457 (+)
ccdc28a ccdc28a coding upstream 85075 16586187 ~ 16593573 (+)
tmem121 tmem121a,tmem121,LOC107594772,LOC107674105,LOC107592808,LOC107697696 coding upstream 139188 16518216 ~ 16539460 (+)
tedc1 NA coding upstream 192250 16471855 ~ 16486398 (+)
dnal1 dnal1 coding upstream 210890 16463901 ~ 16467758 (+)
LOC103021824 efr3b,LOC107697777,LOC107752767,LOC107592778 coding downstream 5986 16687918 ~ 16713041 (+)
LOC103022442 LOC108433935,LOC100537549,LOC107592775,LOC107752809,LOC105908160 coding downstream 39293 16721225 ~ 16729066 (+)
LOC103031040 fam150b,LOC108425626 coding downstream 78891 16760823 ~ 16767006 (+)
sh3yl1 sh3yl1,LOC107733179,LOC107594817,LOC107674108 coding downstream 100605 16782537 ~ 16838704 (+)
LOC103043735 id2,id2a,LOC107579075,LOC107707685,LOC106566577,LOC107655320 coding downstream 835040 17516972 ~ 17519541 (+)
G81074 NA non-coding upstream 16032 16569003 ~ 16662616 (+)
G81106 NA non-coding upstream 57226 16619583 ~ 16621422 (+)
G81105 NA non-coding upstream 60524 16617687 ~ 16618124 (+)
G81103 NA non-coding upstream 62500 16615202 ~ 16616148 (+)
G81083 NA non-coding upstream 152644 16525484 ~ 16526004 (+)
G81190 NA non-coding downstream 35063 16716995 ~ 16719435 (+)
G81197 NA non-coding downstream 47888 16729820 ~ 16730174 (+)
G81220 NA non-coding downstream 158292 16840224 ~ 16845728 (+)
G81224 NA non-coding downstream 182179 16864111 ~ 16864542 (+)
G81243 NA non-coding downstream 297485 16979417 ~ 16982929 (+)
G80857 NA other upstream 1095317 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 1474861 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 1843569 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 1875616 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 1880044 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 1345375 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 1778191 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 1829690 18511622 ~ 18520947 (+)
G81704 NA other downstream 2248306 18930238 ~ 18930754 (+)
G81761 NA other downstream 2983804 19665736 ~ 19666047 (+)

Expression


Co-expression Network