G81348


Basic Information

Item Value
gene id G81348
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 17872765 ~ 17940581 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU109622
ttttttttttttttttttttttgttttttttttcggatttAGTGATATGATGGCACAAAAGCATCTAATAACACATGcaccatttaaaacactgtttacacctggtcacttaatGCATCTtaagtatcaggattatatctggataaagCATAGCCACATGTAAGTCAAGTCAGACACAACTTTGATGGATCACTCAAAACCACGTAAGGAATAGATCATTAAACTGAAAACAATGTTCCTGGGTTGAGCCTGGAAAGTGAACGGTTTAATGTAATGCTGGGGGTTCTAAATGATGTGAAACAATAAATGGTTCTCACACTTTCGTAATGATCTATGAGACAATGTATAGGACTATTTGAGCCAAATGGGAACTTACTCTGTTATACTGCTCTCAATTACTGGTAAATAAGTATGAGCAAgcacatgagagagagagagagagagagagagagagagagagagagagagagagagagagagactgagaaagaaGACGAGATCCTAAAGTAGTAACTACTCATAgtaaggggtgtgccatatcatattatacTCAAAAATATTGCCAAATCTTTCTGATTTTATATAATAGTTATTAATAGTGtacatttttttgctatttgtagcaacagggaaattcagactgttctcatttccattaaatatttactaaagACAGATAATATCTGGATCTGGATATATAAATGCATTGTTAGTATATCATGACACGTTGGACCAGTGACTATGCAATAACACtgccaaattaaatgtaatgttcGTTTTGCTGcagtattgtattcttttttttttttatcagagtatgctgtttacatgactaCTTGAATAAATAGATAACTGCAGATAAGGTGCACATACAAAACATATATGAGTAAATGCAGCCATCTCTCTCCTAGACTCAGAATTGTTGCACAACTAACAAATTCACATATTCCACACTTTTGACTACAAAGTGTAACGTTAAATGCATGTGGCTAAATTCTTATCAagatacaatccagatactatTCACACAAAGTGACCTGTTGTAAACAAATAGGGTCAGTCTAAGTGCTGTAGGCAAGCCTCTGATATGAAGACAGGATAATACGCATCTAATATCTCTGTAAAAAGCTCAGACTCATATCATTGTCCTTTTAGTTACAGTTTGGGTAGAAAGTTACAGATAGTTACAGAAAGTTAAAGCCCAAGGCAAGCTCAACAGTTCTGGACAGAGTAGCTGTGGCTGCACTGCATCTTCATGCCCCAAAGAGGGCGTGTTTTTGCCTACAGCACTTGTGAATGCACAAAAGGACAGCACAAACCACATGTTCAAGTTCGCATGTTCACATGTTCAAACTTGCATAGATATAGTGCTAGACTTAAATGAGCACAGGCCGAACAGTCTTGAAATCAGCCAGAGTTTAGGACAATCCCTGCCAGAATTACAGcgactgtagtttttttttattttatctttttttttggctcctGTTTCCAGTCATAAAAGCTGACATGTGAGAAACAGACATGCAAGTTTCCAACCATCTGACATAGATTATACAGGATTACTGTACAGTACGTCGTTGTGATATACATAGGCATGGCCTCCAGATATGCTTACATGAACTTAGACATGTGGATATCATTGAGATTGATGGTTGTTCTTCAACAGGGTGGGCAACAGGGGCTGAATTCCGACACACTTTACTGCCAATTATGCTCAACTGGATCTACCAAACATGGTGAAATTATCATTAGAGTTGAATTCGGTGTGCTTGGAAAGGAAAAGCACAAATCTGAGCAGGAATCACGCAATCCAGGACTGATATTATTCACCCCTGGTCTACAAGCTGGTCTACGAGcatgaccaaaatcaaatgAAACATATATTATGCTTGTGAAGAGCTGGTAAACAGCTAAAGTATCAGTAAGCCTGTCACGATCATtatgttattgatttattgaacaATATATTGCCTGTTCTTTTAACATTAATATTGAGTGGCCAGGATGTcgattttgtttaaaaagagtggttttatttatttatgccttTAGGATATGTTGAACattttatgtattataattCTAATGCCTGCATATTCTTAAGTATTTAAAGtccattacttttttaaacaatgcaactgcattactattattattattatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109622 True 2167 lncRNA 0.36 2 17872765 17940581

Neighbor

gene id symbol gene type direction distance location
LOC103043735 id2,id2a,LOC107579075,LOC107707685,LOC106566577,LOC107655320 coding upstream 353224 17516972 ~ 17519541 (+)
sh3yl1 sh3yl1,LOC107733179,LOC107594817,LOC107674108 coding upstream 1034061 16782537 ~ 16838704 (+)
LOC103031040 fam150b,LOC108425626 coding upstream 1105759 16760823 ~ 16767006 (+)
LOC103022442 LOC108433935,LOC100537549,LOC107592775,LOC107752809,LOC105908160 coding upstream 1143699 16721225 ~ 16729066 (+)
LOC103021824 efr3b,LOC107697777,LOC107752767,LOC107592778 coding upstream 1159724 16687918 ~ 16713041 (+)
eprs eprs,LOC107662594,LOC107679779 coding downstream 343996 18284577 ~ 18306094 (+)
LOC103038992 NA coding downstream 367666 18308247 ~ 18315290 (+)
ahsa1 ahsa1,ahsa1b,LOC108425677 coding downstream 394519 18335100 ~ 18342283 (+)
LOC103046791 NA coding downstream 409161 18349742 ~ 18411822 (+)
LOC103032442 LOC108425610 coding downstream 495708 18436289 ~ 18440089 (+)
G81347 NA non-coding upstream 143318 17728966 ~ 17729447 (+)
G81335 NA non-coding upstream 232284 17636704 ~ 17640481 (+)
G81312 NA non-coding upstream 361852 17510698 ~ 17510913 (+)
G81293 NA non-coding upstream 751220 17121132 ~ 17121545 (+)
G81291 NA non-coding upstream 752027 17120492 ~ 17120738 (+)
G81446 NA non-coding downstream 135791 18076372 ~ 18095098 (+)
G81452 NA non-coding downstream 196031 18136612 ~ 18137206 (+)
G81460 NA non-coding downstream 269204 18209785 ~ 18210341 (+)
G81465 NA non-coding downstream 325638 18266219 ~ 18266484 (+)
G81466 NA non-coding downstream 336282 18276863 ~ 18277190 (+)
G80857 NA other upstream 2289434 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 2668978 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 3037686 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 3069733 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 3074161 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 86726 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 519542 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 571041 18511622 ~ 18520947 (+)
G81704 NA other downstream 989657 18930238 ~ 18930754 (+)
G81761 NA other downstream 1725155 19665736 ~ 19666047 (+)

Expression


Co-expression Network