cmpk2 (cmpk2)


Basic Information

Item Value
gene id cmpk2
gene name cmpk2
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18027307 ~ 18037074 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU109731
TCCGCTCCCTCGTGCCCGTCCTCCACACTCGCGCTGCTCAGCGCTTTCGGGAGCGCGCGCCTCTTCTCTCTGCTCGTTCACGGCGGCGGCAGGGTACACCGAGCGCGGAGTCACGCCGAGCTCGTGAACGCGCTGAGCTCGCGGCTGCCTCCAGAATGCCGGGTCCTACCGCTGACCGCTTTCCTGCCCGGTGTGAAAGACTCTGTCACCCGGGGATTCTTCCTGCGGGACGAGTCCACCTCCTCCAGCTCCACAGAGCGAGTGTTAAACGAGCTGAAGCAGAGTCACGCGCTCACCGTGTTCTCGTACGAGCGTGAAGAGAATGGTGGGGGGCAGTACTGGTGTCAGGAGCTGTGGGGGTGTCCCACCACAGACACAGAGGCAGGAGAGAACCAGAGGCTATATGTCACACCAGTCACAGCCCCTCAGGAAAACCCAACAGCACTGCATATTATCAACTCTGTTGTGTTCTACAGGCTGGACGATGCCTACCAGGTTCTTGAAGAGTGCAGGGACATCATCCCAGAATCAAAGGAAGTGCTGGAGATTGTCAATCAACAGCTGGAGGCCTACAGGCGGGATATACGGTTTCCAGTCGTTGTGATAAAAGGACTGGATGCTACAGATATTGGCACAGTACTGCAGCGTATGCTATAGCCACAGCAGTGAGCGGAGCTGTGGAGAAACTGCCTGCTCTGGGCTCGGAGATCTACGAGTGGCCCTCTGACCTGCTCCAGCCCAGTCTGGTCCTGCTGCTGACAGTTAGCCCTCGAGAGCGGCTCCGGAGGCTTCAGGGTAGAGGCCTGGGGCAAACTGAAGAGGAGACCCAGCTAGAGGTCAACGACCTGTTCCGCCAAAAagtggatgaagcTTACAAGCGAATCCAGAATCCTGCCTGCGTCACTGTGGATGCCAGCCCCTCCCCTGACCAAGTGCTCCAACAAGTGCTGAGTTTAATTAGAAACAAATGCCACTTGTAAACACTGTTACTGTTGGTGTCGCCTGGAGGCTGCAGTACCTCCCCGCTCCACTAGATGCCAGTATAGCGTTACAAATTTGCCTGCTTTGAGAAGCAGGGCCCCACTGAAAAGTCCCGGGTCTTGGAGTGCATTGGCCGCCCAGGAGGCTGATGGCTTGGGGCCAGCGAGTATCAAAACCCGTATCTGGACATGTCACAACCTGTTCGCTTCCCACAGAGTAGCGCTGATGACACAAGGGGGGAAAGTTATTATGAATGCCGTGGCTAGCCGTCAACTCCCATATACGCTGCTACGGCTTAGCATGTTCCATTCGCTCTGTGTTATGTTATTCCCTCACGCCGGAGCACAGGAACTGAACCGAAAGAGCTTGGCGAATTCATCAATCACTTCAATTAGATTTCACCACAAGGCCCCATTGTTGGTCAGCTCCACGTTAAGTcctaggagagagagagagagaaaaaaaaaatattgctacATATTAAGAGCTATCAGGACCTTATAGGCCTTTATTAGTATTTCATTTGAGCATTAATAAAACGAGATGCTATAgggaagtttttattttattatcttatgCTACATGACATGTTTTACTTTACATTCCAGgctttaaatatgattttggaGATTTGTGTCTAATGCATATTACACTCAGTGTCAAAGAAATAGAAGGAAGTATCTTGTGTGttattcagaaggaagataaacaTTGCTAAGAATAATA
>XM_022672845.1
TAGTTTCGTTTTCTCGTTCAGTTTCGTTTCTCTGCATTTCTGTGCGGTGTGGGTGTGTAAGTGAGggggtgtgtatatgtgtgtttaaacaGTGAGCGCGAGGCAGCTCTGTCCCGCTGtgttggtgtatgtgtgtgtgagcatgtctgCGGTTCGGTTAGCGCGCGGCTGCTCGCGGCTCTTCCTGCTGGAGTTGGAGGCGCGCGCGGAGCcgctgtgttttctgctgcgcGCGGAGCCCTCCGCTCCCTCGTGCCCGTCCTCCACACTCGCGCTGCTCAGCGCTTTCGGGAGCGCGCGCCTCTTCTCTCTGCTCGTTCACGGCGGCGGCAGGGTACACCGAGCGCGGAGTCACGCCGAGCTCGTGAACGCGCTGAGCTCGCGGCTGCCTCCAGAATGCCGGGTCCTACCGCTGACCGCTTTCCTGCCCGGTGTGAAAGACTCTGTCACCCGGGGATTCTTCCTGCGGGACGAGTCCACCTCCTCCAGCTCCACAGAGCGAGTGTTAAACGAGCTGAAGCAGAGTCACGCGCTCACCGTGTTCTCGTACGAGCGTGAAGAGAATGGTGGGGGGCAGTACTGGTGTCAGGAGCTGTGGGGGTGTCCCACCACAGACACAGAGGCAGGAGAGAACCAGAGGCTATATGTCACACCAGTCACAGCCCCTCAGGAAAACCCAACAGCACTGCATATTATCAACTCTGTTGTGTTCTACAGGCTGGACGATGCCTACCAGGTTCTTGAAGAGTGCAGGGACATCATCCCAGAATCAAAGGAAGTGCTGGAGATTGTCAATCAACAGCTGGAGGCCTACAGGCGGGATATACGGTTTCCAGTCGTTGTGATAAAAGGACTGGATGCTACAGGTAAAACCACTCTGACTGAAAGCCTGCAGCAGGCTCTGGGAGCCACTCTTCTGAAATCTCCTCCCCAGTGCCTGGCTGCCTTCAGACAACGCTTTGACTCGGAGCCCCCTCTCATCCGTAGGGCCTTCTACGCTCTGGGGAACTACATTACTGCAGCCCAGATAGCTAGAGAGTCACTACAGAGACCCGTGATTGTGGACAGATATTGGCACAGTACTGCAGCGTATGCTATAGCCACAGCAGTGAGCGGAGCTGTGGAGAAACTGCCTGCTCTGGGCTCGGAGATCTACGAGTGGCCCTCTGACCTGCTCCAGCCCAGTCTGGTCCTGCTGCTGACAGTTAGCCCTCGAGAGCGGCTCCGGAGGCTTCAGGGTAGAGGCCTGGGGCAAACTGAAGAGGAGACCCAGCTAGAGGTCAACGACCTGTTCCGCCAAAAagtggatgaagcTTACAAGCGAATCCAGAATCCTGCCTGCGTCACTGTGGATGCCAGCCCCTCCCCTGACCAAGTGCTCCAACAAGTGCTGAGTTTAATTAGAAACAAATGCCACTTGTAAACACTGTTACTGTTGGTGTCGCCTGGAGGCTGCAGTACCTCCCCGCTCCACTAGATGCCAGTATAGCGTTACAAATTTGCCTGCTTTGAGAAGCAGGGCCCCACTGAAAAGTCCCGGGTCTTGGAGTGCATTGGCCGCCCAGGAGGCTGATGGCTTGGGGCCAGCGAGTATCAAAACCCGTATCTGGACATGTCACAACCTGTTCGCTTCCCACAGAGTAGCGCTGATGACACAAGGGGGGAAAGTTATTATGAATGCCGTGGCTAGCCGTCAACTCCCATATACGCTGCTACGGCTTAGCATGTTCCATTCGCTCTGTGTTATGTTATTCCCTCACGCCGGAGCACAGGAACTGAACCGAAAGAGCTTGGCGAATTCATCAATCACTTCAATTAGATTTCACCACAAGGCCCCATTGTTGGTCAGCTCCACGTTAAGTcctaggagagagagagagagaaaaaaaaaatattgctacATATTAAGAGCTATCAGGACCTTATAGGCCTTTATTAGTATTTCATTTGAGCATTAATAAAACGAGATGCTATAgggaagtttttattttattatcttatgCTACATGACATGTTTTACTTTACATTCCAGgctttaaatatgattttggaGATTTGTGTCTAATGCATATTACACTCAGTGTCAAAGAAATAGAAGGAAGTATCTTGTGTGttattcagaaggaagataaacaTTGCTAAGAATAATAAATGATGAGAAATGTTGACTGATA

Function

symbol description
cmpk2 Predicted to enable nucleobase-containing compound kinase activity. Predicted to be involved in dTDP biosynthetic process; dTTP biosynthetic process; and dUDP biosynthetic process. Predicted to be active in mitochondrion. Is expressed in brain; integument; liver; muscle; and pleuroperitoneal region. Orthologous to human CMPK2 (cytidine/uridine monophosphate kinase 2).

NR:

description
UMP-CMP kinase 2, mitochondrial

GO: NA

KEGG:

id description
K13809 CMPK2; UMP-CMP kinase 2, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
TU109731 False 1707 lncRNA 0.52 4 18027548 18037050
XM_022672845.1 True 2174 mRNA 0.52 5 18027307 18037074

Neighbor

gene id symbol gene type direction distance location
iah1 iah1 coding upstream 124469 17897957 ~ 17902838 (+)
asap2 asap2,LOC107707693 coding upstream 151225 17754553 ~ 17876082 (+)
LOC103043735 id2,id2a,LOC107579075,LOC107707685,LOC106566577,LOC107655320 coding upstream 507766 17516972 ~ 17519541 (+)
sh3yl1 sh3yl1,LOC107733179,LOC107594817,LOC107674108 coding upstream 1188603 16782537 ~ 16838704 (+)
LOC103031040 fam150b,LOC108425626 coding upstream 1260301 16760823 ~ 16767006 (+)
eprs eprs,LOC107662594,LOC107679779 coding downstream 247503 18284577 ~ 18306094 (+)
LOC103038992 NA coding downstream 271173 18308247 ~ 18315290 (+)
ahsa1 ahsa1,ahsa1b,LOC108425677 coding downstream 298026 18335100 ~ 18342283 (+)
LOC103046791 NA coding downstream 312668 18349742 ~ 18411822 (+)
LOC103032442 LOC108425610 coding downstream 399215 18436289 ~ 18440089 (+)
G81348 NA non-coding upstream 86726 17872765 ~ 17940581 (+)
G81358 NA non-coding upstream 132956 17892302 ~ 17894351 (+)
G81349 NA non-coding upstream 147545 17879030 ~ 17879762 (+)
G81347 NA non-coding upstream 297860 17728966 ~ 17729447 (+)
G81335 NA non-coding upstream 386826 17636704 ~ 17640481 (+)
G81446 NA non-coding downstream 39298 18076372 ~ 18095098 (+)
G81452 NA non-coding downstream 99538 18136612 ~ 18137206 (+)
G81460 NA non-coding downstream 172711 18209785 ~ 18210341 (+)
G81465 NA non-coding downstream 229145 18266219 ~ 18266484 (+)
G81466 NA non-coding downstream 239789 18276863 ~ 18277190 (+)
G80857 NA other upstream 2443976 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 2823520 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 3192228 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 3224275 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 3228703 14730508 ~ 14798604 (+)
LOC103035760 rtkn2,rtkn2a other downstream 423049 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 474548 18511622 ~ 18520947 (+)
G81704 NA other downstream 893164 18930238 ~ 18930754 (+)
G81761 NA other downstream 1628662 19665736 ~ 19666047 (+)
G81763 NA other downstream 1636053 19673127 ~ 19673638 (+)

Expression


Co-expression Network