G81539


Basic Information

Item Value
gene id G81539
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18447388 ~ 18500711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU109865
ATAAAAACATACCAGCTGATCATGTACAGTAACAACCaaattgtgtgcatgtgttttttttctgtgtataatAATCTAATGTTTACTATACATTCATTTAAATCTAAGGTTCTGCGTCCAGTTCTCAGGATCCCTATCCTCCATTccacttttttcttgtttttacatTCCAAACCACAAGCAAAAATCACTGGAAGTCCTGGAGGGCTGGATTGGATTTAGATCTCTTTATGATCTTAAttcaagtaaatctgcaacaCACTATTCTGTAACATTCTGTAACCATTGTGAGTTTTCTGTGAATTTTATCACTAACTgagatttcttttaaaaaaccACTCACTACATTTTGTTCTCCAGTATGACTGTTTCTGCATTCCCACAAAGTTTTGAGGTTTGTCAAAGTAGGCCAGAGAAGCATACACTAAAAACACCTCAGGATATTGATCGTATCTCTCATCTTCTATTACATATTAGTAATAAACCTCAACCACATACACTTATACCTTTTTAGCAGGTTGTTAATATGTCTTCTTCTGGAAAGCTaatgtaatacactacaggacagtgtgctTGCTAGTAATAAGTAACATTGCCCACCCCCCTGACCCCTGTCCTGCTCTGACAAATGTATTTTCTGGTAACCCTCAATGTTTGAGGTCCTCTGACAGCAGTACTTCATGTACGTAGTACATCAGTGTCTGCTAATGCTaagctttaaaaacacagtaccTCTCCTGCTCAGTCTTCACCCTTGTACTATTGAACTGATTATTGTATTCTGACTTCCTCAGCTAAGCAAGCAGATTTATATTGTTCACCTTGTTGGACAATATGTCCATATGTGAGACATATGTTGGACAATATGTTTCACCTTGTTGAGACCTCTCTGCTGTTTAGAGTCCTTGGGGAACAACAAAAGCATTGTTAGAATACAGCATACACTATAGTAGACTCTGTTAGAACAAGATCTCTCCACACGTCTGGTCAGTTGGCCCCAGCtgggtttatttcttttttctgatAGATCTGTACTGACTTCCACAGTCACACTGCTTCCTTTCCTGCTGCCGCTACTGTTCATCAGGACTCTGTTTGTACTTTTTCTGGCATGAGGCTAAGGAAAGGTTGCTCCTAACAGATAACCTCTGACTGCAGGATTATTCTGATTTAGTGATGCCAGCCAAGGAATCGGCCACGCGTTGAACTTCCTGCGGCTGTTTGTTCGTCTTTGCGGGGTCATCTTCGAGTCTCCCGTGTGAGGAGCTCTTGACCTTTACCTGCCGCTAATCCTCAGGCCTCAATGTGTCTGCGgtttcttttttgcattttacgttaaagtaaagtcagatcTAAAGAATattacaaatgttttattttacaaagaG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109865 True 1388 lncRNA 0.39 2 18447388 18500711

Neighbor

gene id symbol gene type direction distance location
LOC103032442 LOC108425610 coding upstream 7299 18436289 ~ 18440089 (+)
LOC103046791 NA coding upstream 35566 18349742 ~ 18411822 (+)
ahsa1 ahsa1,ahsa1b,LOC108425677 coding upstream 105105 18335100 ~ 18342283 (+)
LOC103038992 NA coding upstream 132098 18308247 ~ 18315290 (+)
eprs eprs,LOC107662594,LOC107679779 coding upstream 141294 18284577 ~ 18306094 (+)
LOC103034157 LOC108425685,LOC108269929,LOC107719399,LOC107664487,LOC107586877,LOC106610886,LOC106580683 coding downstream 2480 18503191 ~ 18510469 (+)
mrpl35 mrpl35 coding downstream 23043 18523754 ~ 18528689 (+)
hspa4l hspa4l,LOC107561683,LOC107586823 coding downstream 50310 18551021 ~ 18567654 (+)
plk4 plk4,LOC107703461,LOC107561682,LOC107664465,LOC107718857,LOC107586821 coding downstream 67957 18568668 ~ 18579571 (+)
LOC103031945 itpk1,itpk1b,LOC108435758,LOC107664466,LOC107561681,LOC106597151 coding downstream 80158 18580869 ~ 18632555 (+)
G81537 LOC108425611 non-coding upstream 4677 18441069 ~ 18442711 (+)
G81466 NA non-coding upstream 170198 18276863 ~ 18277190 (+)
G81465 NA non-coding upstream 180904 18266219 ~ 18266484 (+)
G81460 NA non-coding upstream 237047 18209785 ~ 18210341 (+)
G81452 NA non-coding upstream 310182 18136612 ~ 18137206 (+)
G81558 chmp3,LOC107732730,LOC107586824 non-coding downstream 44758 18545469 ~ 18550207 (+)
G81600 isca2 non-coding downstream 204104 18704815 ~ 18706282 (+)
G81602 gskip,LOC107731910,LOC107561679 non-coding downstream 213494 18714205 ~ 18717199 (+)
G81701 NA non-coding downstream 364965 18865676 ~ 18865988 (+)
G81705 NA non-coding downstream 430445 18931156 ~ 18937144 (+)
cmpk2 cmpk2 other upstream 410314 18027307 ~ 18037074 (+)
G80857 NA other upstream 2864057 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 3243601 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 3612309 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 3644356 14788602 ~ 14803032 (+)
LOC103033848 LOC108435752 other downstream 10911 18511622 ~ 18520947 (+)
G81704 NA other downstream 429527 18930238 ~ 18930754 (+)
G81761 NA other downstream 1165025 19665736 ~ 19666047 (+)
G81763 NA other downstream 1172416 19673127 ~ 19673638 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 3020196 21520907 ~ 21673438 (+)

Expression


Co-expression Network