G81540


Basic Information

Item Value
gene id G81540
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18475117 ~ 18498878 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU109866
atttttttttaataacaaaGTTGTAGATGACATTGCATATGCTGTAGTGTGACTATTGTGTATGCTCACATTGCTCACATTGATGATGCTAAGACGATATATTGCGCAGCCCTAATGTGCACTTAGCAATGACTTGTATGTCTGTGAcattaaccctagaacactaacattaaaataagtaacgccatcactaacgttgggtatacactgtatgacaagttttggaacctttctttaattttacaacatacaacattacataaaataaaaaaggtactatggatgaccctataaaaaaactgaaaaaatattggaaaatcaAATCCTTAACAAGTAATgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109866 True 341 lncRNA 0.32 2 18475117 18498878

Neighbor

gene id symbol gene type direction distance location
LOC103032442 LOC108425610 coding upstream 35028 18436289 ~ 18440089 (+)
LOC103046791 NA coding upstream 63295 18349742 ~ 18411822 (+)
ahsa1 ahsa1,ahsa1b,LOC108425677 coding upstream 132834 18335100 ~ 18342283 (+)
LOC103038992 NA coding upstream 159827 18308247 ~ 18315290 (+)
eprs eprs,LOC107662594,LOC107679779 coding upstream 169023 18284577 ~ 18306094 (+)
LOC103034157 LOC108425685,LOC108269929,LOC107719399,LOC107664487,LOC107586877,LOC106610886,LOC106580683 coding downstream 4313 18503191 ~ 18510469 (+)
mrpl35 mrpl35 coding downstream 24876 18523754 ~ 18528689 (+)
hspa4l hspa4l,LOC107561683,LOC107586823 coding downstream 52143 18551021 ~ 18567654 (+)
plk4 plk4,LOC107703461,LOC107561682,LOC107664465,LOC107718857,LOC107586821 coding downstream 69790 18568668 ~ 18579571 (+)
LOC103031945 itpk1,itpk1b,LOC108435758,LOC107664466,LOC107561681,LOC106597151 coding downstream 81991 18580869 ~ 18632555 (+)
G81547 NA non-coding upstream 3546 18470407 ~ 18471571 (+)
G81537 LOC108425611 non-coding upstream 32406 18441069 ~ 18442711 (+)
G81466 NA non-coding upstream 197927 18276863 ~ 18277190 (+)
G81465 NA non-coding upstream 208633 18266219 ~ 18266484 (+)
G81460 NA non-coding upstream 264776 18209785 ~ 18210341 (+)
G81558 chmp3,LOC107732730,LOC107586824 non-coding downstream 46591 18545469 ~ 18550207 (+)
G81600 isca2 non-coding downstream 205937 18704815 ~ 18706282 (+)
G81602 gskip,LOC107731910,LOC107561679 non-coding downstream 215327 18714205 ~ 18717199 (+)
G81701 NA non-coding downstream 366798 18865676 ~ 18865988 (+)
G81705 NA non-coding downstream 432278 18931156 ~ 18937144 (+)
LOC103035760 rtkn2,rtkn2a other upstream 5482 18460123 ~ 18469635 (+)
cmpk2 cmpk2 other upstream 438043 18027307 ~ 18037074 (+)
G80857 NA other upstream 2891786 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 3271330 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 3640038 14806315 ~ 14835079 (+)
LOC103033848 LOC108435752 other downstream 12744 18511622 ~ 18520947 (+)
G81704 NA other downstream 431360 18930238 ~ 18930754 (+)
G81761 NA other downstream 1166858 19665736 ~ 19666047 (+)
G81763 NA other downstream 1174249 19673127 ~ 19673638 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 3022029 21520907 ~ 21673438 (+)

Expression


Co-expression Network