LOC103035760 (rtkn2,rtkn2a)


Basic Information

Item Value
gene id LOC103035760
gene name rtkn2,rtkn2a
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18460123 ~ 18469635 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU109871
TGGCTAAATCTCAGCCGCGCAGTGTGTCGGTTTGCTGGGCTGGAGGGGGCTTGTCTCTCTGGGAAAGAGCCAGTATGGAGCTGCCGCGGGACGGACGAATTTTTAGGCGAAATGTGGGAGCAAGGTCCACTGTGTCGGCTTGTTCGTCTTTCGCCATGGAGGTTAAGAGGAAGAAgataagagagagtgtgttgttCCTACAAAACGAGGACTGTGATATACAGGAAAAGATGGACTTTGAGATGCGCATGAGAGCTGGTGCATACAAGCTTCTGGTTGCCAGCACCAAGAGAGAACAGATCCTTGATGCAGCCAAAAGCCTCTTGACCTGCAATGCGAGAATCAAAGCCTATATGTCTGAGGCacaaagaagaaaagaacagcAGGACAAGGCTAAGAGTCTTAGAAGAAGGTCCTTAGATTCCCAGAACCAGGTGCCTTGTAAGGGAAAAGTAGCCATATCGGGTCTGAGAATCCCACTTTTTTGGAAGGATTCTGAGCACTTCAACAGCAAAGGGAATCCTCAGCGAGTGGCGGTCTTTTGTCTAATGAAGATTGGCACTGAGATATTTGACACAGAGATGGTGattgtagacagaacaataactgATATCTGCTTTGAGGGTGTAACTGTCTTG
>TU109872
TGGCTAAATCTCAGCCGCGCAGTGTGTCGGTTTGCTGGGCTGGAGGGGGCTTGTCTCTCTGGGAAAGAGCCAGTATGGAGCTGCCGCGGGACGGACGAATTTTTAGGCGAAATGTGGGAGCAAGGTCCACTGTGTCGGCTTGTTCGTCTTTCGCCATGGAGGTTAAGAGGAAGAAgataagagagagtgtgttgttCCTACAAAACGAGGACTGTGATATACAGGAAAAGATGGACTTTGAGATGCGCATGAGAGCTGGTGCATACAAGCTTCTGGTTGCCAGCACCAAGAGAGAACAGATCCTTGATGCAGCCAAAAGCCTCTTGACCTGCAATGCGAGAATCAAAGCCTATATGTCTGAGGCacaaagaagaaaagaacagcAGGACAAGGCTAAGAGTCTTAGAAGAAGGTCCTTAGATTCCCAGAACCAGGTGCCTTGTAAGGGAAAAGTAGCCATATCGGGTCTGAGAATCCCACTTTTTTGGAAGGATTCTGAGCACTTCAACAGCAAAGGGAATCCTCAGCGAGTGGCGGTCTTTTGTCTAATGAAGATTGGCACTGAGATATTTGACACAGAGATGGTGattgtagacagaacaataactgATATCTGCTTTGAGGGTGTAACTGTCTTG
>TU109873
TGGCTAAATCTCAGCCGCGCAGTGTGTCGGTTTGCTGGGCTGGAGGGGGCTTGTCTCTCTGGGAAAGAGCCAGTATGGAGCTGCCGCGGGACGGACGAATTTTTAGGCGAAATGTGGGAGCAAGGTCCACTGTGTCGGCTTGTTCGTCTTTCGCCATGGAGGTTAAGAGGAAGAAgataagagagagtgtgttgttCCTACAAAACGAGGACTGTGATATACAGGAAAAGATGGACTTTGAGATGCGCATGAGAGCTGGTGCATACAAGCTTCTGGTTGCCAGCACCAAGAGAGAACAGATCCTTGATGCAGCCAAAAGCCTCTTGACCTGCAATGCGAGAATCAAAGCCTATATGTCTGAGGCacaaagaagaaaagaacagcAGGACAAGGCTAAGAGTCTTAGAAGAAGGTCCTTAGATTCCCAGAACCAGGTGCCTTGTAAGGGAAAAGTAGCCATATCGGGTCTGAGAATCCCACTTTTTTGGAAGGATTCTGAGCACTTCAACAGCAAAGGGAATCCTCAGCGAGTGGCGGTCTTTTGTCTAATGAAGATTGGCACTGAGATATTTGACACAGAGATGGTGattgtagacagaacaataactgATATCTGCTTTGAGGGTGTAACTGTCTTG
>TU109874
TGGCTAAATCTCAGCCGCGCAGTGTGTCGGTTTGCTGGGCTGGAGGGGGCTTGTCTCTCTGGGAAAGAGCCAGTATGGAGCTGCCGCGGGACGGACGAATTTTTAGGCGAAATGTGGGAGCAAGGTCCACTGTGTCGGCTTGTTCGTCTTTCGCCATGGAGGTTAAGAGGAAGAAgataagagagagtgtgttgttCCTACAAAACGAGGACTGTGATATACAGGAAAAGATGGACTTTGAGATGCGCATGAGAGCTGGTGCATACAAGCTTCTGGTTGCCAGCACCAAGAGAGAACAGATCCTTGATGCAGCCAAAAGCCTCTTGACCTGCAATGCGAGAATCAAAGCCTATATGTCTGAGGCacaaagaagaaaagaacagcAGGACAAGGCTAAGAGTCTTAGAAGAAGGTCCTTAGATTCCCAGAACCAGGTGCCTTGTAAGGGAAAAGTAGCCATATCGGGTCTGAGAATCCCACTTTTTTGGAAGGATTCTGAGCACTTCAACAGCAAAGGGAATCCTCAGCGAGTGGCGGTCTTTTGTCTAATGAAGATTGGCACTGAGATATTTGACACAGAGATGGTGattgtagacagaacaataactgATATCTGCTTTGAGGGTGTAACTGTCTTG
>TU109875
TGGCTAAATCTCAGCCGCGCAGTGTGTCGGTTTGCTGGGCTGGAGGGGGCTTGTCTCTCTGGGAAAGAGCCAGTATGGAGCTGCCGCGGGACGGACGAATTTTTAGGCGAAATGTGGGAGCAAGGTCCACTGTGTCGGCTTGTTCGTCTTTCGCCATGGAGGTTAAGAGGAAGAAgataagagagagtgtgttgttCCTACAAAACGAGacaaaAGCAAGAATGAAACGGTGCACAAGCCTGAATGACCCTCAGCAGATAATAGAGGACATGAATTTGTTGTACATACGACAAATTTCTAagaaattacagGACTGTGATATACAGGAAAAGATGGACTTTGAGATGCGCATGAGAGCTGGTGCATACAAGCTTCTGGTTGCCAGCACCAAGAGAGAACAGATCCTTGATGCAGCCAAAAGCCTCTTGACCTGCAATGCGAGAATCAAAGCCTATATGTCTGAGGCacaaagaagaaaagaacagcAGGACAAGGCTAAGAGTCTTAGAAGAAGGTCCTTAGATTCCCAGAACCAGGTGCCTTGTAAGGGAAAAGTAGCCATATCGGGTCTGAGAATCCCACTTTTTTGGAAGGATTCTGAGCACTTCAACAGCAAAGGGAATCCTCAGCGAGTGGCGGTCTTTTGTCTAATGAAGATTGGCACTGAGATATTTGACACAGAGATGGTGattgtagacagaacaataactgATATCTGCTTTGAGGGTGTAACTGTCTTG
>TU109876
TGGCTAAATCTCAGCCGCGCAGTGTGTCGGTTTGCTGGGCTGGAGGGGGCTTGTCTCTCTGGGAAAGAGCCAGTATGGAGCTGCCGCGGGACGGACGAATTTTTAGGCGAAATGTGGGAGCAAGGTCCACTGTGTCGGCTTGTTCGTCTTTCGCCATGGAGGTTAAGAGGAAGAAgataagagagagtgtgttgttCCTACAAAACGAGGACTGTGATATACAGGAAAAGATGGACTTTGAGATGCGCATGAGAGCTGGTGCATACAAGCTTCTGGTTGCCAGCACCAAGAGAGAACAGATCCTTGATGCAGCCAAAAGCCTCTTGACCTGCAATGCGAGAATCAAAGCCTATATGTCTGAGGCacaaagaagaaaagaacagcAGGACAAGGCTAAGAGTCTTAGAAGAAGGTCCTTAGATTCCCAGAACCAGGTGCCTTGTAAGGGAAAAGTAGCCATATCGGGTCTGAGAATCCCACTTTTTTGGAAGGATTCTGAGCACTTCAACAGCAAAGGGAATCCTCAGCGAGTGGCGGTCTTTTGTCTAATGAAGATTGGCACTGAGATATTTGACACAGAGATGGTGattgtagacagaacaataactgATATCTGCTTTGAGGGTGTAACTGTCTTG
>TU109877
TGGCTAAATCTCAGCCGCGCAGTGTGTCGGTTTGCTGGGCTGGAGGGGGCTTGTCTCTCTGGGAAAGAGCCAGTATGGAGCTGCCGCGGGACGGACGAATTTTTAGGCGAAATGTGGGAGCAAGGTCCACTGTGTCGGCTTGTTCGTCTTTCGCCATGGAGGTTAAGAGGAAGAAgataagagagagtgtgttgttCCTACAAAACGAGacaaaAGCAAGAATGAAACGGTGCACAAGCCTGAATGACCCTCAGCAGATAATAGAGGACATGAATTTGTTGTACATACGACAAATTTCTAagaaattacagGACTGTGATATACAGGAAAAGATGGACTTTGAGATGCGCATGAGAGCTGGTGCATACAAGCTTCTGGTTGCCAGCACCAAGAGAGAACAGATCCTTGATGCAGCCAAAAGCCTCTTGACCTGCAATGCGAGAATCAAAGCCTATATGTCTGAGGCacaaagaagaaaagaacagcAGGACAAGGCTAAGAGTCTTAGAAGAAGGTCCTTAGATTCCCAGAACCAGGTGCCTTGTAAGGGAAAAGTAGCCATATCGGGTCTGAGAATCCCACTTTTTTGGAAGGATTCTGAGCACTTCAACAGCAAAGGGAATCCTCAGCGAGTGGCGGTCTTTTGTCTAATGAAGATTGGCACTGAGATATTTGACACAGAGATGGTGattgtagacagaacaataactgATATCTGCTTTGAGGGTGTAACTGTCTTG
>XM_022672481.1
AGCCGATTGGCTAAATCTCAGCCGCGCAGTGTGTCGGTTTGCTGGGCTGGAGGGGGCTTGTCTCTCTGGGAAAGAGCCAGTATGGAGCTGCCGCGGGACGGACGAATTTTTAGGCGAAATGTGGGAGCAAGGTCCACTGTGTCGGCTTGTTCGTCTTTCGCCATGGAGGTTAAGAGGAAGAAgataagagagagtgtgttgttCCTACAAAACGAGacaaaAGCAAGAATGAAACGGTGCACAAGCCTGAATGACCCTCAGCAGATAATAGAGGACATGAATTTGTTGTACATACGACAAATTTCTAagaaattacagGACTGTGATATACAGGAAAAGATGGACTTTGAGATGCGCATGAGAGCTGGTGCATACAAGCTTCTGGTTGCCAGCACCAAGAGAGAACAGATCCTTGATGCAGCCAAAAGCCTCTTGACCTGCAATGCGAGAATCAAAGCCTATATGTCTGAGGCacaaagaagaaaagaacagcAGGACAAGGCTAAGAGTCTTAGAAGAAGGTCCTTAGATTCCCAGAACCAGGTGCCTTGTAAGGGAAAAGTAGCCATATCGGGTCTGAGAATCCCACTTTTTTGGAAGGATTCTGAGCACTTCAACAGCAAAGGGAATCCTCAGCGAGTGGCGGTCTTTTGTCTAATGAAGATTGGCACTGAGATATTTGACACAGAGATGGTGattgtagacagaacaataactgATATCTGCTTTGAGGGTGTAACTGTCTTTTGGTCAAAGTTTGAATTACTAATGCTAGTGGCTACTAGTGTTATATCGcaaactATCGAAGGTTTGCAGCGCTGCTGTGGGTTGTACTGTGTGCTAAAGGCTGGATTGCTCTCCTGCTACTTCACCCCTGAGGAGATTCAAGCTAAGGTGGAGCCCAGCATGGTTATCCCAATAAACAAGGATACTCGCATCCGTGTGGTGGAGGGCCACCAGAAGAGTGGGGCTAGACTAAGCTTGATCAATCCAAGGACAAGAGACACTGCTAGCCATGTATTCACAGCTGAGACACAAGAACAATTGCAGGACTGGCTAAACGCCCTTTGGCAACACCTGTATGACCAGAGTCAGTGGCAGCACGCCTGTGACAAGCTGATGGAAATTGAAGTTGTGTCCCCCCGGAAGCCCCCACTTTTCCTTGCTAAACAAGCTGACTCTGTTTATAATGACCTGAGCATTGGTTCTCCAGGAAAATTTGAGAGTTTGACCGATATTATTCACAATAAGATTGAGGAAACTGATGGGCGGTTTCTTATTGGTCAAGAAGAGGAAAGAGAACCTCCTCATTGGGCAGCCCTGTTTGAAGGATCTCGACCAATGGTAGTGCAGAAAACTGTTTTGTCACCAGGTAAAGACAGTGTCCAGTCCACTTCCAGCCCAAGTTCAAACAGCACCAAGAAGAGAAGAGCCCCTCCACCTCCCCCTGATAAGTTACCGTTTGCCCACTCTGTCACTGCACCATCCTGTCTGGAGAAAGAGAACTCTTCCTGTAAAGGGATGAAGTCTCGTACAGGGCGGCCATCGCTGGATGCCAAATTTTCTGCCATCATTCATCAGTTACAGAAGACTCATGCACCATCTCGCAAAAATCCACCGTTAGCCCAGATCGAACCCTCTCAAAATCCTTACACTCCGAAAGAAAGGGACTTTGAGTTTAGCCAGGCTGaacacacagaaataaacagcaTCCAAGCATCTCAGCCCCCAATCCCTGCCCCTAGAAGCAAACTGAGGAAGTCTTTCAGAGAGAAAATGAATCCCAAAGCATGGTGAGCTACTGAGAAACGCTTAACTCGTTCGGACACCATCTCTATGCCTATTTTATACCTaccatttaatcattttaaataaagattttagtAACAAAAAATTTTagtaaacatttttacaaaactGCAGACTTTAAAGTTAAATGACAGGACTGAAACGAATGTCTTGGCAGCTAATATCATGTATATCTTTCAATCTAACAAACTGTGAactcaaatgtatttaaaaatataaacacttacaatttcaaaaaaataatgaaccACTAAACTATACGCACTTTCGATAAGACCTTTGGCACATTAAGTTGTATAAATGCACATTAGGTGGCTTCTGCTGCCTTCAGGTTTGTTGAGAGCACAACATGTACAGTCTTCTATAGTTTACACTAATGACAGAATTAGAGGTGTAACCAGGGAAATTGAGGCTTCTGTATTATTGTAATAGTAAAACAATAGTAGTAGGCTAATAATTAAACTGGcaacagaaaataattaaactaaTGAAAAATGTAACAAGCTTCTAGCATCaatatatttcattaatttgCTTGGGATTGTTAAGACATGCACAAAGACATTTGTTAAACTAAGCAATTAAGCAGAAATGTATTGTAAATGTcgataattttttcttttttaaatatatatttttttcttaactgtTTACTAGGCTAACTTACTAGACTGACTGCCTTAATCGATGCAGATTTAATACCTGCACTTAAAGCTATGTGAGAGATGTGAGATGTGATTTAGAATATGCTAGACAATaagtttaataatgtaaaatgtagagGTAAATAGTTACTGTGCAATATTGTATGCTTATGTTCAAAAAAACCTGTTTGTTGTAGTTTTCTCCATGTACATGTATTTGTTCattgtcagttttttttccccctcattaGAACAGAATAAACCACTAAACTCA

Function

symbol description
rtkn2a Predicted to be involved in hemopoiesis and positive regulation of cell population proliferation. Predicted to act upstream of or within signal transduction. Is expressed in proliferative region. Orthologous to human RTKN2 (rhotekin 2).
rtkn2 Involved in negative regulation of intrinsic apoptotic signaling pathway; positive regulation of NF-kappaB transcription factor activity; and positive regulation of NIK/NF-kappaB signaling. Located in cytoplasm and nucleus.

NR:

description
PREDICTED: rhotekin-2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109871 False 638 TUCP 0.48 5 18460130 18464096
TU109872 False 638 TUCP 0.48 5 18460130 18464096
TU109873 False 638 TUCP 0.48 5 18460130 18464096
TU109874 False 638 TUCP 0.48 6 18460130 18464096
TU109875 False 740 TUCP 0.46 6 18460130 18464096
TU109876 False 638 TUCP 0.48 5 18460130 18464096
TU109877 False 740 TUCP 0.46 6 18460130 18464096
XM_022672481.1 True 2727 mRNA 0.41 11 18460123 18469635

Neighbor

gene id symbol gene type direction distance location
LOC103032442 LOC108425610 coding upstream 20034 18436289 ~ 18440089 (+)
LOC103046791 NA coding upstream 48301 18349742 ~ 18411822 (+)
ahsa1 ahsa1,ahsa1b,LOC108425677 coding upstream 117840 18335100 ~ 18342283 (+)
LOC103038992 NA coding upstream 144833 18308247 ~ 18315290 (+)
eprs eprs,LOC107662594,LOC107679779 coding upstream 154029 18284577 ~ 18306094 (+)
zfyve28 zfyve28 coding downstream 12044 18481679 ~ 18497039 (+)
LOC103034157 LOC108425685,LOC108269929,LOC107719399,LOC107664487,LOC107586877,LOC106610886,LOC106580683 coding downstream 33556 18503191 ~ 18510469 (+)
mrpl35 mrpl35 coding downstream 54119 18523754 ~ 18528689 (+)
hspa4l hspa4l,LOC107561683,LOC107586823 coding downstream 81386 18551021 ~ 18567654 (+)
plk4 plk4,LOC107703461,LOC107561682,LOC107664465,LOC107718857,LOC107586821 coding downstream 99033 18568668 ~ 18579571 (+)
G81537 LOC108425611 non-coding upstream 17412 18441069 ~ 18442711 (+)
G81466 NA non-coding upstream 182933 18276863 ~ 18277190 (+)
G81465 NA non-coding upstream 193639 18266219 ~ 18266484 (+)
G81460 NA non-coding upstream 249782 18209785 ~ 18210341 (+)
G81452 NA non-coding upstream 322917 18136612 ~ 18137206 (+)
G81547 NA non-coding downstream 772 18470407 ~ 18471571 (+)
G81540 NA non-coding downstream 5482 18475117 ~ 18498878 (+)
G81558 chmp3,LOC107732730,LOC107586824 non-coding downstream 75834 18545469 ~ 18550207 (+)
G81600 isca2 non-coding downstream 235180 18704815 ~ 18706282 (+)
G81602 gskip,LOC107731910,LOC107561679 non-coding downstream 244570 18714205 ~ 18717199 (+)
cmpk2 cmpk2 other upstream 423049 18027307 ~ 18037074 (+)
G80857 NA other upstream 2876792 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 3256336 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 3625044 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 3657091 14788602 ~ 14803032 (+)
LOC103033848 LOC108435752 other downstream 41987 18511622 ~ 18520947 (+)
G81704 NA other downstream 460603 18930238 ~ 18930754 (+)
G81761 NA other downstream 1196101 19665736 ~ 19666047 (+)
G81763 NA other downstream 1203492 19673127 ~ 19673638 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 3051272 21520907 ~ 21673438 (+)

Expression


Co-expression Network