G81558 (chmp3,LOC107732730,LOC107586824)


Basic Information

Item Value
gene id G81558
gene name chmp3,LOC107732730,LOC107586824
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18545469 ~ 18550207 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU109895
tgtaaattgatcataagTTTTTACTTTAGGGGACGACTTGGGAACCCCCACACCTGTATTAGTTGTGAGGTAGTATCTGGCCAGTATGTTCATAGCAAGAGACCATAAGTTTTAGCAAGGCCTGATAGCGGGCGCTAGACTGATCAAATATTCTGCTTCTGAAGATGTACAGGAATTTAACACTATTTGTTGCACAGTTTCACGTGTGTTCCaggaaaaaaatcaaagaaacatagattgtgactggcagcatcAAGGTGAATCTGTCACACACCTGTCACACACATACTGCattttttagcttccatgggacatagCAAAGGTAATGGAGCataatactagttcctgtctcgTGACTTCTGGCATGTAGgcatataatttttgtttttttcaattgcacgGAAACATCCCTCAGACTCCGTCTTGCAAATTTATTCCTTTACCTTTCCATGTTTTGCACATACATAAAAAACGTCTTCTGCACAGGAGTTTACACTTCTTATTAAAGGGCTGAAATGAAGCAAACCACTCAATCCATCAAGGACTGTACAAAACAATGTCAGGAAATCATTGTGAACCACGGTGAAAAGTTATTGTCACTAGACTGGTATAAAATTTTTGCAACCAGGGTAAACTGTTAACTGTTCACAAAAAGTGACTCTGTAGGGTTACAAAAGGGTTGTAACATCTGTGTAAACTACATTACAAACCGTCTGAAAGCTAGCAGACTTAAAAAACAAATGGAGAGGTTTAAGAGAATGCTGCCTCATGCCAGTAAGCTGGATATATTATCTTTTATGAGTGCTTTCTACAGCTTTCTACAGGAAGGCCCTACAGAGAAagctacacacatacacaatgcAGTATTGTGCTGAAAGAAACAGTTGTGTTTGTGGCATTGTAACGAAAAAAGTAGCAACTCAATCTCACGTCACAAAACTGTCACTGATAGTGTTTTACAAATCAATCATGTTAACAAAAATGATTGAATGAAAATGTTTGTACATTTGAGAAACCAAAAAATATTGAGCGtatttataaatacaatttGAAACAGAGATATggaacagaaacaaaacaaagacaGAACAGGGGCTCTACCCATTACCCATTAAAATTTTAGAAGTGAAGTTAGGAATTAGAGTAGgagtaagatttttttatgaGGCACTAGGAGGCTACACTGCATTTGATACACTCCTGATAACAATGTAGCCAATTTTTACAACAGCATTATGCAGCAAGATGACTCGCTGTGACGTTTTTATAAACAGATAATATCAGTAATAACGAAATGGTCAGTTACaacttttgttaaataaaggtttgaCAAAGCCAATTTCATTGTTCTCAAAcatgataaaacatttttggacTTCAACAGTGAACTCCAGCCTCTGTGTTCTGGCTAATACAGCCCTTTCAGTTACTTCTGCAGTGCTCATTGCTCCTAAGTGCAAAATCTGCATTTGAAATGACAGATTTACAGAGAGTGAGGAGTGAATTTCCACCCTGACAGGCTTTACGAACACTGGCTCTGATTCAAGGCCCTGGTGTGAAAGCTATATTTATCATAGTCACAGCAATTCTCCACAGTTACACATGTAGGAGTGCTTTTTCATGTAGTTGCCAATTCAagtaaatatctatatattcataaaatgtTTGCATACAGTGGCTATCATGAATGTCTCCAAACTCAGTAAAGCCAAACAGATGAATGTTTGTAAAGAGAAGAAGCATTCGCTTTAGACAGCAAATAAGGCTTGCGAAACTACAGTAAAGATAACATtaaagacagacaaacaaagacCAACACCAAGCTGACTGCACTTTAAAACAGATACTTGGTCATGTCGCACAGCTATAGGCATAGATTCAGCTTGTTTTTAACTCATATTAATTAAAGCAGAAATCACTGACTTCTtcattaaatatgtttgaaaataaagattcCCATGCACCCATAAATTTACTGCTCTACAATGCTTGAGATTGCTGTTAATTTGACCCAGCTGGGAGCCAGAGTTCTCCACTTAATCTGTAGCCAGATCAATTCTCCTCGTCTTGTTTTCTGTGTGAAATTATTACATAGATTGTTGATACAAATCCAATCCATTGAGGAACATACAGAAAACATGAGACGAATAGAAGAAAAAGCAATTCAATAGTTCAATAACTCAGATGAGGTCTATGCCTATAGAGCTTCAGAGTAGACAGAAAGAGATGAAGATGTGGCGTTTTAGCTCCTCAGTGCTGCTAGCCTTGACTGCATTTCTTCAATgttttcctcttcttcatcctctgAAGCCGCTGTAGCCCCCATCGACTCCGGCTCGGGAAGAGCATCTGTGACTTTGCTGGGAGCTTTTCCAAGGGCGCCCGCAGTGATCTCAAAGAGGATTTTATCAACCTCAGCCTCTGCTGCTTCTTCCATTTCCTCCCCATCTTCCATGCTCTCAAACGTGTCCTCCAGCATTTCTTCTATGATGCCAGCcTTCATCATCTCCTTTGAAAGATCCCTCATGGTAGCCTGAATCTCTGGGATTTTAACCAGGCTCTGCATGGCTTTCATGACCTCTGTGCTTTTCTGCAATGCACCAGCCACTCTTAATACAGACAACTGATTCTTCATACTGAGAAGTACTGAGTTCATTTGGGCTTTGGAGGCATAGAGTTTGTTGACGGCCTTCTTTGACTGAATCATCTCTTTGGCAAGAACAATACACACGTCCTTCTGTCCCTTCTTTGCTGCATCTTTAATTGATCTCTTCACCTTCTCCTCTTCCCTCTGAAtgtCTCTTATTTGCCTGTCAATTACCCGCATTTCTTTCCGTATTTTCAACGACCATTCGTTGATCAAATCTTTGGGTGGTCTGTCTTGTGTCTTCCCGAAAAGCCCCATTATTAAACTGTTAGTTCAGGTAACCGATTAGTATGAGGTGCGACCAAAACAGCGCGTTTACTTCCGATACTTCCCCATTCT

Function

symbol description
chmp3 Predicted to be involved in endosome transport via multivesicular body sorting pathway; late endosome to vacuole transport; and protein transport. Predicted to act upstream of or within vacuolar transport. Predicted to be located in cytosol and late endosome membrane. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Orthologous to several human genes including RNF103-CHMP3 (RNF103-CHMP3 readthrough).

NR:

description
charged multivesicular body protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109895 True 2986 lncRNA 0.39 6 18545469 18550207

Neighbor

gene id symbol gene type direction distance location
mrpl35 mrpl35 coding upstream 16780 18523754 ~ 18528689 (+)
LOC103034157 LOC108425685,LOC108269929,LOC107719399,LOC107664487,LOC107586877,LOC106610886,LOC106580683 coding upstream 35000 18503191 ~ 18510469 (+)
zfyve28 zfyve28 coding upstream 48430 18481679 ~ 18497039 (+)
LOC103032442 LOC108425610 coding upstream 105380 18436289 ~ 18440089 (+)
LOC103046791 NA coding upstream 133647 18349742 ~ 18411822 (+)
hspa4l hspa4l,LOC107561683,LOC107586823 coding downstream 814 18551021 ~ 18567654 (+)
plk4 plk4,LOC107703461,LOC107561682,LOC107664465,LOC107718857,LOC107586821 coding downstream 18461 18568668 ~ 18579571 (+)
LOC103031945 itpk1,itpk1b,LOC108435758,LOC107664466,LOC107561681,LOC106597151 coding downstream 30662 18580869 ~ 18632555 (+)
eml5 eml5,si:dkey-1f12.3,LOC108435760 coding downstream 83962 18634169 ~ 18704075 (+)
npc2 npc2 coding downstream 158205 18708412 ~ 18712887 (+)
G81539 NA non-coding upstream 44758 18447388 ~ 18500711 (+)
G81540 NA non-coding upstream 46591 18475117 ~ 18498878 (+)
G81547 NA non-coding upstream 73898 18470407 ~ 18471571 (+)
G81537 LOC108425611 non-coding upstream 102758 18441069 ~ 18442711 (+)
G81466 NA non-coding upstream 268279 18276863 ~ 18277190 (+)
G81600 isca2 non-coding downstream 154608 18704815 ~ 18706282 (+)
G81602 gskip,LOC107731910,LOC107561679 non-coding downstream 163998 18714205 ~ 18717199 (+)
G81701 NA non-coding downstream 315469 18865676 ~ 18865988 (+)
G81705 NA non-coding downstream 380949 18931156 ~ 18937144 (+)
G81708 NA non-coding downstream 391201 18941408 ~ 18941814 (+)
LOC103033848 LOC108435752 other upstream 24522 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 75834 18460123 ~ 18469635 (+)
cmpk2 cmpk2 other upstream 508395 18027307 ~ 18037074 (+)
G80857 NA other upstream 2962138 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 3341682 15174535 ~ 15203787 (+)
G81704 NA other downstream 380031 18930238 ~ 18930754 (+)
G81761 NA other downstream 1115529 19665736 ~ 19666047 (+)
G81763 NA other downstream 1122920 19673127 ~ 19673638 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 2970700 21520907 ~ 21673438 (+)
G82488 NA other downstream 3807437 22357644 ~ 22358135 (+)

Expression


Co-expression Network