G81600 (isca2)


Basic Information

Item Value
gene id G81600
gene name isca2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18704815 ~ 18706282 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU109957
TACTCATTCTAAtaccattttattattaaacatatccTATTTACAAATGTACAAGAAAATGCAGATAGTGAAGATCTATATACTGATCATGCCACAATCATACGGCACACTGAATTACTAGAATAGTgaaataaatggcaaaatccTTTACTTGACTTTGGAACCACTGAAAACAACTGAGCTGTGTCTGGATTTTAAATAAGCACttatttgtctgtagtttacgaTACACTGTGCAAAGaccttttaaataaaagtggCTCTCAATTCCGCTCCCATTGACTTCATTTTGTCAGCTGCTCTTTCTCTTCACGCAAAAATATGAACTGAATACACAATGTAGGAGAGGatttaaaaaccactgttaaaTGCATTTAGGATGGAAACACTGATGTAAAGACAGCTCTCAGAGTTTAACAGAAAAAGAGCTGCCACAAGAGCAGCCGTGGTCTGCCTGAGGGTTCTTGAGGACCTGGAAGGAGGAGCGGATGAGCTCCTGGCTAAAGTCGAGTGTGGCTCCTTTCACAAAATCCAGGCTGTCCTGGTCTACTATCACCCCAACACCATTCTGTTcaaaaaccCTGTCATCATCATTTTTGACTTTGTCTACTAAGAACTTATACTGGAAGCCAGAGCAGCCCCCTCCTTCCACCTGTATCCTCAGATACTCGCCCTTTTCCATGATCTCAGCAAGCCTCTTGACGCAAGACTCTGTGAGATGCACTTTATCCTCTGGTTGACTGGCTGTCTGCTGCTCCTGAGCTGGGCTATTGCTGTATCGCATTGTGGAGATGAGAGGGGGGAGCTGAGATGCGTGCATTACCCTCACAGGCCGGGATGGAGAGAGCACCATTCCAGAGGATGcact

Function

symbol description
isca2 Predicted to enable 2 iron, 2 sulfur cluster binding activity; 4 iron, 4 sulfur cluster binding activity; and iron ion binding activity. Predicted to be involved in iron-sulfur cluster assembly and protein maturation by [4Fe-4S] cluster transfer. Predicted to act upstream of or within protein maturation by iron-sulfur cluster transfer. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in multiple mitochondrial dysfunctions syndrome 4. Orthologous to human ISCA2 (iron-sulfur cluster assembly 2).

NR:

description
iron-sulfur cluster assembly 2 homolog, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109957 True 868 lncRNA 0.43 3 18704815 18706282

Neighbor

gene id symbol gene type direction distance location
eml5 eml5,si:dkey-1f12.3,LOC108435760 coding upstream 740 18634169 ~ 18704075 (+)
LOC103031945 itpk1,itpk1b,LOC108435758,LOC107664466,LOC107561681,LOC106597151 coding upstream 72260 18580869 ~ 18632555 (+)
plk4 plk4,LOC107703461,LOC107561682,LOC107664465,LOC107718857,LOC107586821 coding upstream 125244 18568668 ~ 18579571 (+)
hspa4l hspa4l,LOC107561683,LOC107586823 coding upstream 137161 18551021 ~ 18567654 (+)
mrpl35 mrpl35 coding upstream 176126 18523754 ~ 18528689 (+)
npc2 npc2 coding downstream 2130 18708412 ~ 18712887 (+)
atg2b atg2b,LOC107738272,LOC107664023 coding downstream 10256 18716538 ~ 18749129 (+)
msh4 msh4 coding downstream 44411 18750693 ~ 18764580 (+)
ktn1 ktn1 coding downstream 59371 18765653 ~ 18800218 (+)
LOC103028664 peli2,LOC103028664,LOC108435764,LOC107664501,LOC107586838,LOC107561697,LOC107668538,LOC107733323,LOC107732184,LOC108270353 coding downstream 104191 18810473 ~ 18829957 (+)
G81558 chmp3,LOC107732730,LOC107586824 non-coding upstream 154608 18545469 ~ 18550207 (+)
G81539 NA non-coding upstream 204104 18447388 ~ 18500711 (+)
G81540 NA non-coding upstream 205937 18475117 ~ 18498878 (+)
G81547 NA non-coding upstream 233244 18470407 ~ 18471571 (+)
G81537 LOC108425611 non-coding upstream 262104 18441069 ~ 18442711 (+)
G81602 gskip,LOC107731910,LOC107561679 non-coding downstream 7923 18714205 ~ 18717199 (+)
G81701 NA non-coding downstream 159394 18865676 ~ 18865988 (+)
G81705 NA non-coding downstream 224874 18931156 ~ 18937144 (+)
G81708 NA non-coding downstream 235126 18941408 ~ 18941814 (+)
G81725 NA non-coding downstream 594076 19300358 ~ 19324568 (+)
LOC103033848 LOC108435752 other upstream 183868 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 235180 18460123 ~ 18469635 (+)
cmpk2 cmpk2 other upstream 667741 18027307 ~ 18037074 (+)
G80857 NA other upstream 3121484 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 3501028 15174535 ~ 15203787 (+)
G81704 NA other downstream 223956 18930238 ~ 18930754 (+)
G81761 NA other downstream 959454 19665736 ~ 19666047 (+)
G81763 NA other downstream 966845 19673127 ~ 19673638 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 2814625 21520907 ~ 21673438 (+)
G82488 NA other downstream 3651362 22357644 ~ 22358135 (+)

Expression


Co-expression Network