G81701


Basic Information

Item Value
gene id G81701
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18865676 ~ 18865988 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU110103
TGTCAGGTCTTTAGTCTGTCTGcttctcatgtctgtgttattctcaggtctgtgtttcattcccagtgtttttccactcacctgtgttcatttgtagctccgccccttcgtcccaggtgtttcctgttccctgtgtgtgtgcacctctatttaaggtccgtgttccatttccccggtgtcgatccttgtacgtttatcgtctgtcagtgctccatgttttcccctgtttcctcagtcctgttttcgttaataaatcccattttgtttgcatttgcgtccgcctccgcgtcctccctgcacccgcacctgacaA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110103 True 313 lncRNA 0.49 1 18865676 18865988

Neighbor

gene id symbol gene type direction distance location
LOC103028664 peli2,LOC103028664,LOC108435764,LOC107664501,LOC107586838,LOC107561697,LOC107668538,LOC107733323,LOC107732184,LOC108270353 coding upstream 35719 18810473 ~ 18829957 (+)
ktn1 ktn1 coding upstream 65458 18765653 ~ 18800218 (+)
msh4 msh4 coding upstream 101096 18750693 ~ 18764580 (+)
atg2b atg2b,LOC107738272,LOC107664023 coding upstream 116547 18716538 ~ 18749129 (+)
npc2 npc2 coding upstream 152789 18708412 ~ 18712887 (+)
LOC103039716 LOC108425599 coding downstream 899348 19765336 ~ 19767308 (+)
LOC103040036 NA coding downstream 934209 19800197 ~ 19828205 (+)
LOC103037509 LOC108425602 coding downstream 1284430 20150418 ~ 20154682 (+)
LOC103035446 hadhab,LOC103035446,LOC108425650,LOC100304971,LOC107594700,LOC107752738,LOC107679805,LOC107600864,LOC107741851 coding downstream 1295280 20161268 ~ 20174309 (+)
tmem62 tmem62,LOC103132791 coding downstream 1318922 20184910 ~ 20199839 (+)
G81602 gskip,LOC107731910,LOC107561679 non-coding upstream 148477 18714205 ~ 18717199 (+)
G81600 isca2 non-coding upstream 159394 18704815 ~ 18706282 (+)
G81558 chmp3,LOC107732730,LOC107586824 non-coding upstream 315469 18545469 ~ 18550207 (+)
G81539 NA non-coding upstream 364965 18447388 ~ 18500711 (+)
G81705 NA non-coding downstream 65168 18931156 ~ 18937144 (+)
G81708 NA non-coding downstream 75420 18941408 ~ 18941814 (+)
G81725 NA non-coding downstream 434370 19300358 ~ 19324568 (+)
G81742 NA non-coding downstream 663439 19529427 ~ 19531587 (+)
G81745 NA non-coding downstream 677394 19543382 ~ 19546608 (+)
LOC103033848 LOC108435752 other upstream 344729 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 396041 18460123 ~ 18469635 (+)
cmpk2 cmpk2 other upstream 828602 18027307 ~ 18037074 (+)
G80857 NA other upstream 3282345 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 3661889 15174535 ~ 15203787 (+)
G81704 NA other downstream 64250 18930238 ~ 18930754 (+)
G81761 NA other downstream 799748 19665736 ~ 19666047 (+)
G81763 NA other downstream 807139 19673127 ~ 19673638 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 2654919 21520907 ~ 21673438 (+)
G82488 NA other downstream 3491656 22357644 ~ 22358135 (+)

Expression


Co-expression Network