G81742


Basic Information

Item Value
gene id G81742
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 19529427 ~ 19531587 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU110155
GAACCGCCCACTACGCCACAACCTCACCAATAAAAAGCAAGTTAACCACCCACTGCGGAAAAATATGACCAATTAAAAAGTTATCAAGTAAGTTAGTCCAGAGCCACCCACTGCGGAAAAATACAACCAATCACAAGTTAGTAAGCAAATTAGTCCAGAGCTACATGAAATTAGTCACTCGCACTTACGAGTTGGAAGCTGAGCCAGCTGGATCGCGGCACAGCGGTTGAGCCAGGAGACGGAGCGAGCCGTTTAGAATTAGATCTAACAAGTGAATATCGCAGATCAGGAGCTATTAGCCGCTTTTGTTAAAGCTGGGAAACTAATACGCTAGTTTAGCCTTGTCAATCTGCCGAGTGGATTGGACTTCTGGAGTCATCTCGAGCGCGCAACCGAGTTTTCGCCGTGGGTTGCCAGATAACCTGAAACTAAACGATTCCGGATCGGATTTGGCCAGTTTTGATTGGGATACACTACTGATAAGAACCTGCCGCCTGGTCACGAGAGCCCAGTCGAGTAGAAGACGCGATGGCGAGCCTCAGCCCAAAGGAACTTCGTACctgaGCATTGAATCTTGAGTAtcccttctgtttttttttttacggttggactttttttttttcctcctcgtTCCAAGTGAGTTACACTGCGTTACCTGCATAACGAACAGAAACTGATAAACCGATTCTTGGACGGACTGAAACACTTAAAGAACAGACTTTGCTTCGTCCAGTCACATTTAAtgtgaattgaactgaattgattTACATCGTAAATACTGTGGGTTTAATTCTAGTAAGCTGATACTGAATTTTgcactgttttgttattttattttattacttggGCGAATTTGTGAATTATTGggttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110155 True 871 lncRNA 0.43 3 19529427 19531587

Neighbor

gene id symbol gene type direction distance location
LOC103028664 peli2,LOC103028664,LOC108435764,LOC107664501,LOC107586838,LOC107561697,LOC107668538,LOC107733323,LOC107732184,LOC108270353 coding upstream 699470 18810473 ~ 18829957 (+)
ktn1 ktn1 coding upstream 729209 18765653 ~ 18800218 (+)
msh4 msh4 coding upstream 764847 18750693 ~ 18764580 (+)
atg2b atg2b,LOC107738272,LOC107664023 coding upstream 780298 18716538 ~ 18749129 (+)
npc2 npc2 coding upstream 816540 18708412 ~ 18712887 (+)
LOC103039716 LOC108425599 coding downstream 233749 19765336 ~ 19767308 (+)
LOC103040036 NA coding downstream 268610 19800197 ~ 19828205 (+)
LOC103037509 LOC108425602 coding downstream 618831 20150418 ~ 20154682 (+)
LOC103035446 hadhab,LOC103035446,LOC108425650,LOC100304971,LOC107594700,LOC107752738,LOC107679805,LOC107600864,LOC107741851 coding downstream 629681 20161268 ~ 20174309 (+)
tmem62 tmem62,LOC103132791 coding downstream 653323 20184910 ~ 20199839 (+)
G81725 NA non-coding upstream 204859 19300358 ~ 19324568 (+)
G81708 NA non-coding upstream 587613 18941408 ~ 18941814 (+)
G81705 NA non-coding upstream 592283 18931156 ~ 18937144 (+)
G81701 NA non-coding upstream 663439 18865676 ~ 18865988 (+)
G81602 gskip,LOC107731910,LOC107561679 non-coding upstream 812228 18714205 ~ 18717199 (+)
G81745 NA non-coding downstream 11795 19543382 ~ 19546608 (+)
G81769 NA non-coding downstream 144976 19676563 ~ 19676889 (+)
LOC111193210 NA non-coding downstream 190612 19722199 ~ 19744428 (+)
G81822 NA non-coding downstream 369576 19901163 ~ 19908098 (+)
G81827 NA non-coding downstream 389482 19921069 ~ 19924676 (+)
G81704 NA other upstream 598673 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 1008480 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 1059792 18460123 ~ 18469635 (+)
cmpk2 cmpk2 other upstream 1492353 18027307 ~ 18037074 (+)
G80857 NA other upstream 3946096 15563987 ~ 15583331 (+)
G81761 NA other downstream 134149 19665736 ~ 19666047 (+)
G81763 NA other downstream 141540 19673127 ~ 19673638 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 1989320 21520907 ~ 21673438 (+)
G82488 NA other downstream 2826057 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 3698843 23230430 ~ 23231318 (+)

Expression


Co-expression Network