G81769



Basic Information


Item Value
gene id G81769
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 19676563 ~ 19676889 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU110185
tcattcatctactgtttacgtatcatttgcactgctaaatttaaattattatataactgtatttgcactttctgtatggctgacatcagttatccttatccttactttatgcacatcaactggtgttcgctgtctattgtgttcaactgcactacctccattttacatcacacacacacactaaagactgtacttttataatttcattttattttttattttgttgtatttatatgtatcatttatattttttatctttttgtaactttgtgtactatacacacctgctgctggatgtcaagaatttcccatcggggatcaataaag

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU110185 True 327 lncRNA 0.31 1 19676563 19676889

Neighbor


gene id symbol gene type direction distance location
LOC103028664 peli2,LOC103028664,LOC108435764,LOC107664501,LOC107586838,LOC107561697,LOC107668538,LOC107733323,LOC107732184,LOC108270353 coding upstream 846606 18810473 ~ 18829957 (+)
ktn1 ktn1 coding upstream 876345 18765653 ~ 18800218 (+)
msh4 msh4 coding upstream 911983 18750693 ~ 18764580 (+)
atg2b atg2b,LOC107738272,LOC107664023 coding upstream 927434 18716538 ~ 18749129 (+)
npc2 npc2 coding upstream 963676 18708412 ~ 18712887 (+)
LOC103039716 LOC108425599 coding downstream 88447 19765336 ~ 19767308 (+)
LOC103040036 NA coding downstream 123308 19800197 ~ 19828205 (+)
LOC103037509 LOC108425602 coding downstream 473529 20150418 ~ 20154682 (+)
LOC103035446 hadhab,LOC103035446,LOC108425650,LOC100304971,LOC107594700,LOC107752738,LOC107679805,LOC107600864,LOC107741851 coding downstream 484379 20161268 ~ 20174309 (+)
tmem62 tmem62,LOC103132791 coding downstream 508021 20184910 ~ 20199839 (+)
G81745 NA non-coding upstream 129955 19543382 ~ 19546608 (+)
G81742 NA non-coding upstream 144976 19529427 ~ 19531587 (+)
G81725 NA non-coding upstream 351995 19300358 ~ 19324568 (+)
G81708 NA non-coding upstream 734749 18941408 ~ 18941814 (+)
G81705 NA non-coding upstream 739419 18931156 ~ 18937144 (+)
LOC111193210 NA non-coding downstream 45310 19722199 ~ 19744428 (+)
G81822 NA non-coding downstream 224274 19901163 ~ 19908098 (+)
G81827 NA non-coding downstream 244180 19921069 ~ 19924676 (+)
G81830 dpysl5,LOC103380375 non-coding downstream 268246 19945135 ~ 19948417 (+)
G81856 NA non-coding downstream 313650 19990539 ~ 19991729 (+)
G81763 NA other upstream 2925 19673127 ~ 19673638 (+)
G81761 NA other upstream 10516 19665736 ~ 19666047 (+)
G81704 NA other upstream 745809 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 1155616 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 1206928 18460123 ~ 18469635 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 1844018 21520907 ~ 21673438 (+)
G82488 NA other downstream 2680755 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 3553541 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 4198550 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 4232793 23909682 ~ 23973975 (+)

Expression



Co-expression Network