G81822


Basic Information

Item Value
gene id G81822
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 19901163 ~ 19908098 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU110252
tcCATTTTCAGTGTTCATAAGCACATATAGCACCACCCATTCACTGTCAATCAGCTCATGAATTGAATTGATGTTTGATATAAGCAAACTATGTAAAGGAAGACAGaggacagtaaataaaaaatctagtCAACCGTCAACCCCAATACGAGAGAAAGGCATTTCAGCAGGAAGTAACACACAAACCTCACCAAATTAACTTTCTTAAATGGTTCTGCATAAGATTTTCATCACAGTgccatttattatttatcatctCCCAGCAGATGTCAAACGGCAGACTTGAGACATTTCCAAGTGGTTGAATACTAGTATTAAACCACTCATGTAATTTTGTGCCCAACCATATCAACAACAATAAAGCTACACTACTTTTACATTAGCACCACTTCCCCCCTCAAAACCTCCATCATAGCAGTACCAAAATTTGCCCTGCTAATACTGCCATTTCTGACCAAGGCTTTAAGCTTAAGTTACAGCACATTCCATATGTTGATCTACTTACAGAGCAGATGGACAATTCTACAGAGGCCTGGACTAATAATTGATTAAAGACAGACTCAGTAAGTGCACAGTGCACTTTGTCTTATTGTCTCCAGGGCATTCTTACAAAGAAcaaaacgtgaaaaaaaaaacctcaatgGATTAAACATGTAAGAGAAAACAAAGAAgcatgtaattaaattaaattgaattacaaCAAATTAAATACACTGATGAACAATTTGAACGATCTgacagttatttttatttcccccagcaaaaaaaaaagttaaaaaaaaattatatagtgCTTATTTCATTTTGAAATGGGATGAATCCTGCATTAACAGTAAAGAACGTGTAGGGGGCATTCATTCTCCTGAATCTAACTGTTGCTGCCGGTGGAGTCTGTTAATGAGCCTTTTGATTTTCTCCCGCTTTTTCTTCACCAGCGTCTGAGGAAACCACTCGCTCAGATCCACTCCAGGATGTAAAATCTGTGGTGGattCATGATGAGGCTCTCTGCATACTGTAGAAGGTAAACCCCACAGTCAGTGTGATTATCCTGCTGTGGGACCTGCAGACTCCATCCATTCATGGACCCATTTGCAAAACTCCGCCGGGTGCCCTTCTTCACCAACCATTCCATTTCCAAGTATTCTTGCAGTATTTTCACCACCGTTGGTTTGGAACGACAGCTGAGTGAATCCATAATGAGAATGCAAGGCTGTTTTGAGGCAATATTGAAGACATTTCTGCTGGTGCCATTATACTGAATATCATCATCTGAGTCATGATCTGAAACAAAGCAGAATCCTTCATCCATCTCTCCTATGGATACACTCTGCCTTGAGAGGTGTTCAGATGCTGGTTGTCTGTAGAAAAGTGACATGGGATTAGGATGAGAGGGGCTGGGAGTGTACTCCATGCTCTCCTCATTTCCAGAAGAATCCATGGTGGAGCAGGGTGAAGCCTGGCCTGGGAAGCAGATGACAGCCAGGTACCAGTGAGACAACTGGTTAATTGGGACAAAAATGAAGTCCTTCTCAAAAAGATCCAAATGCCGGGTCCATGTTTTTACTCTGTTATGCCTCTTCTCCTGAACTGATAAACCTGGGGTGTCCTGATGACCTTCCTGTGTGAGACTCTTATAAAAGAAGGAACTGACAACATGACACCTACTGGTGTCCTTCGTCTCCAACTTCTCACAGACcaaatatTTCAAGTAAAAGTCCACTATCACATCATTCAAGAATTCTCCTTCATCAAGGCATCTTAGGTCTTCCTCAGTAATGGAAAATCCCCCTTTGGCTGGAGGAGGCGGATACACAATCAGTCTTGCCGTTTTTGAAGAAGGGTACACCATCAAGTCATCATTATTATTGTCTTCATTATGGTCCTCACTGTCTGAAAGATCAAACGTTGTTATCTCGCTCTGTGTACTGGTGGAGAAATATCTGCTGATCTCTCCTTTCTCTTGGTTTCTATTTGAGGTGGTAACTTCTGAAGAAAATAGCGTCAAAGGAACCTTGTCCACCTCATCTAATAGCAGATAAtcCTTCTCTTTCTGAGGCTGCCTGTTTGCCATCAATCTGTCATTAGCTTCATCGAATGCAAGACAGGCTGAAATGTTGCTTATGTTATTACGCCTGCCAATCTCTGCAAAAATCTGTTCAAGAAGGGCCTTTTCCAGCAATGTTGGTTCACTCTCAAAGATGAGGAcaatgtatttttcattttgacCAATGGTAAGATCTCCTAGACGAAGCCATTCAGCAGCAGTTGTTTGTAAAAACAGAGCTGGCAGTTTATGCTCTGTACACCATTCACAACTGATCAATCCTGATGCCACAATTTGAGCTTTGTTTGGAATTTCAATAGAATCTACTGAAAAAGTGACTGTTCCCCTGAAGTTCATGTTCAGTGTCCCAAGTCTCAGACTTCTGATGTTGAGGGTAACACGGTTAAATTCTTCTAGGTCATCCCACGTCAAAGAAGGAAACTTTGTGATGGAGGGTTTTGACTTTGTCTTGCATTTGATTGGGACAATTTCTCCAAATGATCCCTCATGCGACTCTTCCGAGAGAGTTTGTTCACAGGCTGTGTATCAGTGCAGTACATCCGATCTTTAGAATTGACTGTCCCACAGTTAACAACTGGCCCATCTTTATCAATTTCAATGATCTCTGGATGTGACAAAGGATGTCGGGTCTCTTCAGGGCTGCCTCCTCTACAAAATGTGGACCAGTGAGAAATGATAGGCTCCTGGTTCAATTTATGGATTGAACTTTTTACAGAATTTTACAAACCCAGGAGCATGATAGAAGCGGCGCCTCTGCAGAAGAACGCCTTTTGGTGGTGGAAGACCAAAATCCTCATCAAAATCCAGTGGCAAACTGTCACGTTGTTTGCGACTCTGGGTCATAGTTTGAGAAAGATCACTGAGGGGACAGAAAAACATCATAAATGTCTAGCTAGAGTTAAAGTTAACTGGCTAGAGATAAATAGTTAACTAAGGTAAATAAACATTCCCAGTCAtcatttaaattacagtaaactAGATTAGCTAACAAAATTTAATTCCCATAAATTTTATGCGCCTTTAAAAATGTATCGCACATCTAACGCTAACTAGTTTAATAACGCTAAAGAGCGCTAACTTACCAACGCCAATTAACGATAACTAACGCTAACTAACGATACAAAACTAACGCTAGACAACTAACGCTAATTATCGAGTGCTAGCTAGCTGATGCTAGATAACTAAACTAACCCCAGTTAACAAAATATCTTACGTTGACGTAAGGGTTAACTaacttaactagttaaccaacTCACAGAATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110252 True 3329 lncRNA 0.40 17 19901163 19908098

Neighbor

gene id symbol gene type direction distance location
LOC103040036 NA coding upstream 72958 19800197 ~ 19828205 (+)
LOC103039716 LOC108425599 coding upstream 133855 19765336 ~ 19767308 (+)
LOC103028664 peli2,LOC103028664,LOC108435764,LOC107664501,LOC107586838,LOC107561697,LOC107668538,LOC107733323,LOC107732184,LOC108270353 coding upstream 1071206 18810473 ~ 18829957 (+)
ktn1 ktn1 coding upstream 1100945 18765653 ~ 18800218 (+)
msh4 msh4 coding upstream 1136583 18750693 ~ 18764580 (+)
LOC103037509 LOC108425602 coding downstream 242320 20150418 ~ 20154682 (+)
LOC103035446 hadhab,LOC103035446,LOC108425650,LOC100304971,LOC107594700,LOC107752738,LOC107679805,LOC107600864,LOC107741851 coding downstream 253170 20161268 ~ 20174309 (+)
tmem62 tmem62,LOC103132791 coding downstream 276812 20184910 ~ 20199839 (+)
elmsan1 elmsan1 coding downstream 305011 20213109 ~ 20246310 (+)
mta1 mta1,LOC107679789,LOC107666257 coding downstream 483272 20391370 ~ 20446806 (+)
LOC111193210 NA non-coding upstream 156735 19722199 ~ 19744428 (+)
G81769 NA non-coding upstream 224274 19676563 ~ 19676889 (+)
G81745 NA non-coding upstream 354555 19543382 ~ 19546608 (+)
G81742 NA non-coding upstream 369576 19529427 ~ 19531587 (+)
G81725 NA non-coding upstream 576595 19300358 ~ 19324568 (+)
G81827 NA non-coding downstream 12971 19921069 ~ 19924676 (+)
G81830 dpysl5,LOC103380375 non-coding downstream 37037 19945135 ~ 19948417 (+)
G81856 NA non-coding downstream 82441 19990539 ~ 19991729 (+)
G81899 NA non-coding downstream 241679 20149777 ~ 20179530 (+)
G81913 NA non-coding downstream 277716 20185814 ~ 20187153 (+)
G81763 NA other upstream 227525 19673127 ~ 19673638 (+)
G81761 NA other upstream 235116 19665736 ~ 19666047 (+)
G81704 NA other upstream 970409 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 1380216 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 1431528 18460123 ~ 18469635 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 1612809 21520907 ~ 21673438 (+)
G82488 NA other downstream 2449546 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 3322332 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 3967341 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 4001584 23909682 ~ 23973975 (+)

Expression


Co-expression Network