G81856


Basic Information

Item Value
gene id G81856
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 19990539 ~ 19991729 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU110304
GCTCCGTGTCAGCGGACTTGGGAGAGATCTTGTCTCCGTTTCCTATAGGCACCGGCTCTGGGGTAGTGGCCACTGTGGGGGAGGCGGGGTCCGTAGGCTGCTGCTGAGGTGGTGGAGGCTGCTGCTGGGGAGGAGGCTGCGGCTGTGGTTGAGGCTGGGCTTTGGGGAGAGCCTGAGGCTGGGCTATTatttgttgctgctgctgctgttgctgtgtCGTTGGAGGTGCAGATGGCATTGGTGGTGGGGGCGGTGGAGGCGCAGGGGTCCGTGGGCCGCTGAAGGTGTCGATGCCTTTCTGAGGGTCGTCCTCCACGTCTCCGTGCTCGTCCATGGAGTTCATCCCGGAAACCTGCTTTGCCTTTTTCTCCGCCTGCAGGACAAGGGGGAACAGGAAgagtggaaaaagagagagacggtaaagagagagagatggtaaaGGACAAGCGGGAGGGAGTGGACACTTGCAACTTCCTGAAAGAGGCTTGCGGGTCTTTTAGCGGCGATAATTGTTTGCTTTGTTTACAGTGCGGTAATCCCACGTGCCAAAGCAAATATTTCCAGTCCCTCTCGACAAAGAGCGAGTGACTCCCATTCGAGGACAAGCAGGGTCAAAgaaggagcaaaaaaaaaaaaaagagagagagagagagagagaacaacacagaacaaaacaaaaaaaagaacccTTGTGGAAAAAATATCCTCCCTGATCCTATAAAGGGAAAGGCGTTTGCGGCAACTTTGAAGAGGCGAGTCTTTCCGCTGTGGTTGAGGTGCGCCGAGAACAGCGCGCTGCAGAGTTCATTGAGTTTGCCGAACCTGACTCTAAGCCATTAGGTCAACAACAGAGGACACGGGCCAAGCCGTGACTTAAGCTGCTCACAGAAAATCCCCAACAGCTGCACACATTCtgcaacctctctctctctctctctcttactctcactcactttctctctctctctctctctctctctctctctgcagctcgctttctcgctcactcactcacacgtGAATCTCTTTCACAGCTGTACTCCCTCTGCTGCCGGCGTCCAACTCCGTCTCGGATTTCACTCAACACACACGTGAACCTGGCCGAGTGTAAGCgccagtgtgagtgtgtgtatgatggggggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110304 True 1143 lncRNA 0.54 2 19990539 19991729

Neighbor

gene id symbol gene type direction distance location
LOC103040036 NA coding upstream 162334 19800197 ~ 19828205 (+)
LOC103039716 LOC108425599 coding upstream 223231 19765336 ~ 19767308 (+)
LOC103028664 peli2,LOC103028664,LOC108435764,LOC107664501,LOC107586838,LOC107561697,LOC107668538,LOC107733323,LOC107732184,LOC108270353 coding upstream 1160582 18810473 ~ 18829957 (+)
ktn1 ktn1 coding upstream 1190321 18765653 ~ 18800218 (+)
msh4 msh4 coding upstream 1225959 18750693 ~ 18764580 (+)
LOC103037509 LOC108425602 coding downstream 158689 20150418 ~ 20154682 (+)
LOC103035446 hadhab,LOC103035446,LOC108425650,LOC100304971,LOC107594700,LOC107752738,LOC107679805,LOC107600864,LOC107741851 coding downstream 169539 20161268 ~ 20174309 (+)
tmem62 tmem62,LOC103132791 coding downstream 193181 20184910 ~ 20199839 (+)
elmsan1 elmsan1 coding downstream 221380 20213109 ~ 20246310 (+)
mta1 mta1,LOC107679789,LOC107666257 coding downstream 399641 20391370 ~ 20446806 (+)
G81830 dpysl5,LOC103380375 non-coding upstream 42122 19945135 ~ 19948417 (+)
G81827 NA non-coding upstream 65863 19921069 ~ 19924676 (+)
G81822 NA non-coding upstream 82441 19901163 ~ 19908098 (+)
LOC111193210 NA non-coding upstream 246111 19722199 ~ 19744428 (+)
G81769 NA non-coding upstream 313650 19676563 ~ 19676889 (+)
G81899 NA non-coding downstream 158048 20149777 ~ 20179530 (+)
G81913 NA non-coding downstream 194085 20185814 ~ 20187153 (+)
G81917 NA non-coding downstream 230753 20222482 ~ 20223668 (+)
G81919 crip1,LOC103034058,LOC106611282,LOC107600860 non-coding downstream 269870 20261599 ~ 20272723 (+)
G81920 NA non-coding downstream 309549 20301278 ~ 20301732 (+)
G81763 NA other upstream 316901 19673127 ~ 19673638 (+)
G81761 NA other upstream 324492 19665736 ~ 19666047 (+)
G81704 NA other upstream 1059785 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 1469592 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 1520904 18460123 ~ 18469635 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 1529178 21520907 ~ 21673438 (+)
G82488 NA other downstream 2365915 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 3238701 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 3883710 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 3917953 23909682 ~ 23973975 (+)

Expression


Co-expression Network