G81899


Basic Information

Item Value
gene id G81899
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 20149777 ~ 20179530 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU110372
AAAGGCAGAATTTCATTACTTATTATGCTAATACATCACCACCAGGCTAGTTCATCAAGAAACATCCTATtcatgaggttttttttttcttcaggttttTAGTTACTAAAATGTAAACCAGGGTCAGTTCTTAAGCTGAGCTAAGGTGGACACAGACCATCCAGGATTTATccctttaaacagaaaaaaaaaacatatattctaCCTAACGAGTCAAGTGTTCATACTCAAGTGGTTGATTGCGGATGGTCAGCGTCCACTTCTGCAAATAAGCCTGGAACTGATCCTGACAAGAACCAGGATAATtaatcagtaaaataaaaaaataataaatgtgcaaAATGCATCAGTAAGAAGTTACACAATAAAGCTGTTATTTAAGATTCAAATTGAAAGCCATCATAAACAATGTGGCTCAATTAATCCACTCAACACTTCAGATATACTAGTATAAGTTCCGTTTAAGATAGTATTAAAGAGAAATTGTAGAAAATGCACCCAAACCAGTAAAggtcacaaaaaaaagtaatcacTTATAACCAAACAGTTTCCCATGCTGAAATACCTCAATGGTTAGTATTAAATGCGGCTTTGTGAAATATCGATTTATCCTTAGCCTATCCTTACCATCACCCACAGAACTGCAAAAAATGTAGTTACCAACGATGGAGAAAAAAAGTGCTGATAGGGAACAACAAACATGGAAAGACGAAAGCTGAAACAAACACCTTTAAAGAAGATAATAGTGAATACAATGTGGAGCAGCTATTAAACTGCATGTGTTTGTAGCCTGGCATGGTTTGCTTTGCTGTTCCTTTTATTGGGCCTTTTAGAAGACCTTTGCATCTAGGACTTCAGACAAGTCCCTAAAAAAGTGCATGGTCTCAGACAGATACCATAATAATACACAGTCAGTGGGCTAGAGCAGCATTTGTTCACTTAACATTCATAACCGGGGTTATCCGCATGAGGGGAATTCAAAGTGCATATAATcacttttataataatattcccAGAGAGGGAATAGTTTGGTTATTATTTTCGGACGTAAACCAAAATATGAAATCTTACAAGTATTTCTGTGAATGTCACAGTTtacatcagctgtgtgtgtgtgtgtgtgaataatgctaactgaattaaaacatgataaatgaGACCAAAACAATAAAGGTCAGTCGGTGCCCCATAAATGTATAGTGTATGTGCGCTCATTATCCCTCTTTGACCCTGTTTACACTTGGTTGCTTTATGTCATTAATTGCTGTGTGGAACAGAACATGGATATTTACTTAATGCGCAGTTTTGGATGTCGAATACTTGTTGGAGCAACAAATCTgtttatagtgtagtgtgttgCTGAAGCATAATCTTTGCTTCTAAACTTTGGGTAGAGAAATCCAACTTGTAGAGGTTTCACAGTGGATTTTCCTACTTAGAACTCTGGAATTCCGAGTTTAACTTAAATGCAGTGATCTGTGTGAATAGATTGGTATTCGTTTTAAATGCATCTCGGGTACCTTTATGCTTGAATATTGATGTGGCTTAGTCTAATCCAAACATACAGGTAATACTGATACTGAAGATGCATGAAGCggccaggtgtaaacagagGCTTTGTGTGAAAATGCTCTACCATGGATCGAAAGAGAACTTTGCTGCAGATGGTAAGGCACCGTTTTGTGGAATCGTTTCTGAAATCGATAAGGTTTTTTGTCGTCATATAAAAATCACTCAACAGTTAAAATGCTATCCAAGAACCGTACTGTGACCTAAGCTCCCCAATCTCCAAGTGGCATTTAAGGCACGGTTAGCGCTTACCATAACAAATACTAAGTGTTACGTGTCCCTTTCGACtagtttcacttttttttttattactgtgattatttGACTTTCTCTCTTATGCATTACTGTTGTCAGATTAACACTAAATGTACCAATCGCCCATATTTGTTCAGTTAAATAACAGCAAATAGGGTTATACTCTTTCTTATGTGTGTAGAAAAGTTTGTCAAGTACAGTGAGAGGTAAAAGTCTTGTCCAGCATAATGGGCATTCTGTCAAAAAAATGGTTCGGAGAAAATCGAATTGACAAAATTACAAAAGGTTCCTGTTTACTTGAAATGTAGCCAATCAGCCAAAGTATGTCCTGTGCCTAAAGCAAAACTGGAAAAACTACACCAGCAAACGTCATACACCAAACATGTTTTGGCTGACCAACTACATGTAGAGAAAACAGAACAGTTTGTAAATCTGACTTGTCTctgaaccattttttttaacatatttgttGTAGGAGACAAATCAGATGTGGTGTAAATCATGGGAAAGGATTTGGAAGATAGGCAAAAAACGCTGTTCAACTGCAACACCTGACACCGCCTGCAGAGCCACTTTTGCTGTTCACGTCAACATTTTCATTGGTGGTCTCTTTTCCA
>TU110373
ctgtgtgtgtgtctgtgtgtgtgtgtgtgtgaataatgctaactgaattaaaacatgataaatgaGACCAAAACAATAAAGGTCAGTCGGTGCCCCATAAATGTATAGTGTATGTGCGCTCATTATCCCTCTTTGACCCTGTTTACACTTGGTTGCTTTATGTCATTAATTGCTGTGTGGAACAGAACATGGATATTTACTTAATGCGCAGTTTTGGATGTCGAATACTTGTTGGAGCAACAAATCTgtttatagtgtagtgtgttgCTGAAGCATAATCTTTGCTTCTAAACTTTGGGTAGAGAAATCCAACTTGTAGAGGTTTCACAGTGGATTTTCCTACTTAGAACTCTGGAATTCCGAGTTTAACTTAAATGCAGTGATCTGTGTGAATAGATTGGTATTCGTTTTAAATGCATCTCGGGTACCTTTATGCTTGAATATTGATGTGGCTTAGTCTAATCCAAACATACAGGTAATACTGATACTGAAGATGCATGAAGCggccaggtgtaaacagagGCTTTGTGTGAAAATGCTCTACCATGGATCGAAAGAGAACTTTGCTGCAGATGGTAAGGCACCGTTTTGTGGAATCGTTTCTGAAATCGATAAGGTTTTTTGTCGTCATATAAAAATCACTCAACAGTTAAAATGCTATCCAAGAACCGTACTGTGACCTAAGCTCCCCAATCTCCAAGTGGCATTTAAGGCACGGTTAGCGCTTACCATAACAAATACTAAGTGTTACGTGTCCCTTTCGACtagtttcacttttttttttattactgtgattatttGACTTTCTCTCTTATGCATTACTGTTGTCAGATTAACACTAAATGTACCAATCGCCCATATTTGTTCAGTTAAATAACAGCAAATAGGGTTATACTCTTTCTTATGTGTGTAGAAAAGTTTGTCAAGTACAGTGAGAGGTAAAAGTCTTGTCCAGCATAATGGGCATTCTGTCAAAAAAATGGTTCGGAGAAAATCGAATTGACAAAATTACAAAAGGTTCCTGTTTACTTGAAATGTAGCCAATCAGCCAAAGTATGTCCTGTGCCTAAAGCAAAACTGGAAAAACTACACCAGCAAACGTCATACACCAAACATGTTTTGGCTGACCAACTACATGTAGAGAAAACAGAACAGTTTGTAAATCTGACTTGTCTctgaaccattttttttaacatatttgttGTAGGAGACAAATCAGATGTGGTGTAAATCATGGGAAAGGATTTGGAAGATAGGCAAAAAACGCTGTTCAACTGCAACACCTGACACCGCCTGCAGAGCCACTTTTGCTGTTCACGTCAACATTTTCATTGGTGGTCTCTTTTCCA
>TU110374
ctgtgtgtgtgtgtgtgtaatgctaactgaattaaaacatgataaatgaGACCAAAACAATAAAGGTCAGTCGGTGCCCCATAAATGTATAGTGTATGTGCGCTCATTATCCCTCTTTGACCCTGTTTACACTTGGTTGCTTTATGTCATTAATTGCTGTGTGGAACAGAACATGGATATTTACTTAATGCGCAGTTTTGGATGTCGAATACTTGTTGGAGCAACAAATCTgtttatagtgtagtgtgttgCTGAAGCATAATCTTTGCTTCTAAACTTTGGGTAGAGAAATCCAACTTGTAGAGGTTTCACAGTGGATTTTCCTACTTAGAACTCTGGAATTCCGAGTTTAACTTAAATGCAGTGATCTGTGTGAATAGATTGGTATTCGTTTTAAATGCATCTCGGGTACCTTTATGCTTGAATATTGATGTGGCTTAGTCTAATCCAAACATACAGGTAATACTGATACTGAAGATGCATGAAGCggccaggtgtaaacagagGCTTTGTGTGAAAATGCTCTACCATGGATCGAAAGAGAACTTTGCTGCAGATGGTAAGGCACCGTTTTGTGGAATCGTTTCTGAAATCGATAAGGTTTTTTGTCGTCATATAAAAATCACTCAACAGTTAAAATGCTATCCAAGAACCGTACTGTGACCTAAGCTCCCCAATCTCCAAGTGGCATTTAAGGCACGGTTAGCGCTTACCATAACAAATACTAAGTGTTACGTGTCCCTTTCGACtagtttcacttttttttttattactgtgattatttGACTTTCTCTCTTATGCATTACTGTTGTCAGATTAACACTAAATGTACCAATCGCCCATATTTGTTCAGTTAAATAACAGCAAATAGGGTTATACTCTTTCTTATGTGTGTAGAAAAGTTTGTCAAGTACAGTGAGAGGTAAAAGTCTTGTCCAGCATAATGGGCATTCTGTCAAAAAAATGGTTCGGAGAAAATCGAATTGACAAAATTACAAAAGGTTCCTGTTTACTTGAAATGTAGCCAATCAGCCAAAGTATGTCCTGTGCCTAAAGCAAAACTGGAAAAACTACACCAGCAAACGTCATACACCAAACATGTTTTGGCTGACCAACTACATGTAGAGAAAACAGAACAGTTTGTAAATCTGACTTGTCTctgaaccattttttttaacatatttgttGTAGGAGACAAATCAGATGTGGTGTAAATCATGGGAAAGGATTTGGAAGATAGGCAAAAAACGCTGTTCAACTGCAACACCTGACACCGCCTGCAGAGCCACTTTTGCTGTTCACGTCAACATTTTCATTGGTGGTCTCTTTTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110372 True 2441 lncRNA 0.37 2 20177054 20179530
TU110373 False 1349 lncRNA 0.38 3 20149777 20179530
TU110374 False 1333 lncRNA 0.38 3 20149777 20179530

Neighbor

gene id symbol gene type direction distance location
LOC103040036 NA coding upstream 321572 19800197 ~ 19828205 (+)
LOC103039716 LOC108425599 coding upstream 382469 19765336 ~ 19767308 (+)
LOC103028664 peli2,LOC103028664,LOC108435764,LOC107664501,LOC107586838,LOC107561697,LOC107668538,LOC107733323,LOC107732184,LOC108270353 coding upstream 1319820 18810473 ~ 18829957 (+)
ktn1 ktn1 coding upstream 1349559 18765653 ~ 18800218 (+)
msh4 msh4 coding upstream 1385197 18750693 ~ 18764580 (+)
tmem62 tmem62,LOC103132791 coding downstream 5380 20184910 ~ 20199839 (+)
elmsan1 elmsan1 coding downstream 33579 20213109 ~ 20246310 (+)
mta1 mta1,LOC107679789,LOC107666257 coding downstream 211840 20391370 ~ 20446806 (+)
tmem229b tmem229b,LOC107752730,LOC107578043,LOC107708331,LOC107679790,LOC107666241 coding downstream 268380 20447910 ~ 20464852 (+)
LOC103044638 LOC108425659,LOC108270359,LOC107679799,LOC107752725,LOC107666266 coding downstream 534893 20714423 ~ 20771645 (+)
G81856 NA non-coding upstream 158048 19990539 ~ 19991729 (+)
G81830 dpysl5,LOC103380375 non-coding upstream 201360 19945135 ~ 19948417 (+)
G81827 NA non-coding upstream 225101 19921069 ~ 19924676 (+)
G81822 NA non-coding upstream 241679 19901163 ~ 19908098 (+)
LOC111193210 NA non-coding upstream 405349 19722199 ~ 19744428 (+)
G81913 NA non-coding downstream 6284 20185814 ~ 20187153 (+)
G81917 NA non-coding downstream 42952 20222482 ~ 20223668 (+)
G81919 crip1,LOC103034058,LOC106611282,LOC107600860 non-coding downstream 82069 20261599 ~ 20272723 (+)
G81920 NA non-coding downstream 121748 20301278 ~ 20301732 (+)
G81955 NA non-coding downstream 192584 20372114 ~ 20372392 (+)
G81763 NA other upstream 476139 19673127 ~ 19673638 (+)
G81761 NA other upstream 483730 19665736 ~ 19666047 (+)
G81704 NA other upstream 1219023 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 1628830 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 1680142 18460123 ~ 18469635 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 1341377 21520907 ~ 21673438 (+)
G82488 NA other downstream 2178114 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 3050900 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 3695909 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 3730152 23909682 ~ 23973975 (+)

Expression


Co-expression Network