G81913


Basic Information

Item Value
gene id G81913
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 20185814 ~ 20187153 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU110406
GGTCTGCAGGTCGACCAGCATCAACCCAGCACTCAACCAGTATTTTCTGTGTTCAGAACAATGATCACCCACTACCAAAGCAGCACTAAACCAGCATGTTTTGTGCTCTGAACACTGGTCAGCAGATTGACCAGCATCAAActacgaggctgaagttggcgTCTTATTCGCCAGTGTCTTATTCGGATTTtccggtccaccttaaaaagtcGAAGTACCAATTATTCGCCAGTAGAGAGCAGGGTTGAGCCGAGCAAAACGAGTTTGGCATTTAGGGCATATTACACTGAGAATACATTGCCTGTTCTGGGTATTTCCAGTTGCCCGAACTCCAGATtatcaaatagtctgttgaatttgacaccacattatgaaaatataacTAGTATACTGTGAATAGCCTAAAGAACTTAACATttaatgtacagttttttttattatgagcctctgaacttggcatttgagaagattaaaggagaataaattgcctgttctgcatatttctagatgccctaaatccacatattcaaatagtctgttaaatttgacacaaattatgaaaatatacCTATTAAACTGTGAACAGcctttataacaaaaaaaaatactgtacagtttttttataatgagcctctgaacttggcatttgagaagatgtcaggagaataaattgcctgttctgcatatttccagttacCCTAATTCCAGATTGTCAAATAGTCTGTTAAATTTGAcacaaaatcatgaaaacatacCTATTACACTGTGATGAGCCcaaagagctaaaaatattactgtacagtttttttattatgaccctgtgaacttggcatttgagaagattaaagaagaataaattgcctgttctgcatatttccagatgccctaaatccagattctcaaatagtctgttaaATTTGACACAAAATTATGAAACTATACCTATTAAACTGTGAACAGccttta

Function

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0021510 spinal cord development biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0021517 ventral spinal cord development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110406 True 966 lncRNA 0.36 2 20185814 20187153

Neighbor

gene id symbol gene type direction distance location
LOC103035446 hadhab,LOC103035446,LOC108425650,LOC100304971,LOC107594700,LOC107752738,LOC107679805,LOC107600864,LOC107741851 coding upstream 11505 20161268 ~ 20174309 (+)
LOC103037509 LOC108425602 coding upstream 31132 20150418 ~ 20154682 (+)
LOC103040036 NA coding upstream 357609 19800197 ~ 19828205 (+)
LOC103039716 LOC108425599 coding upstream 418506 19765336 ~ 19767308 (+)
LOC103028664 peli2,LOC103028664,LOC108435764,LOC107664501,LOC107586838,LOC107561697,LOC107668538,LOC107733323,LOC107732184,LOC108270353 coding upstream 1355857 18810473 ~ 18829957 (+)
elmsan1 elmsan1 coding downstream 25956 20213109 ~ 20246310 (+)
mta1 mta1,LOC107679789,LOC107666257 coding downstream 204217 20391370 ~ 20446806 (+)
tmem229b tmem229b,LOC107752730,LOC107578043,LOC107708331,LOC107679790,LOC107666241 coding downstream 260757 20447910 ~ 20464852 (+)
LOC103044638 LOC108425659,LOC108270359,LOC107679799,LOC107752725,LOC107666266 coding downstream 527270 20714423 ~ 20771645 (+)
slc25a21 slc25a21,LOC107679800 coding downstream 590285 20777438 ~ 20888798 (+)
G81899 NA non-coding upstream 6284 20149777 ~ 20179530 (+)
G81856 NA non-coding upstream 194085 19990539 ~ 19991729 (+)
G81830 dpysl5,LOC103380375 non-coding upstream 237397 19945135 ~ 19948417 (+)
G81827 NA non-coding upstream 261138 19921069 ~ 19924676 (+)
G81822 NA non-coding upstream 277716 19901163 ~ 19908098 (+)
G81917 NA non-coding downstream 35329 20222482 ~ 20223668 (+)
G81919 crip1,LOC103034058,LOC106611282,LOC107600860 non-coding downstream 74446 20261599 ~ 20272723 (+)
G81920 NA non-coding downstream 114125 20301278 ~ 20301732 (+)
G81955 NA non-coding downstream 184961 20372114 ~ 20372392 (+)
G81983 NA non-coding downstream 356558 20543711 ~ 20543911 (+)
G81763 NA other upstream 512176 19673127 ~ 19673638 (+)
G81761 NA other upstream 519767 19665736 ~ 19666047 (+)
G81704 NA other upstream 1255060 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 1664867 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 1716179 18460123 ~ 18469635 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 1333754 21520907 ~ 21673438 (+)
G82488 NA other downstream 2170491 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 3043277 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 3688286 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 3722529 23909682 ~ 23973975 (+)

Expression


Co-expression Network