G81919 (crip1,LOC103034058,LOC106611282,LOC107600860)


Basic Information

Item Value
gene id G81919
gene name crip1,LOC103034058,LOC106611282,LOC107600860
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 20261599 ~ 20272723 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU110414
CACTGCTTCAAATGTACAATTGATTctttaataagaaaaaagaagctTGAATAGTGCTTCAAAATTATTGGTCAGACCATCATTCCTTGGTGCGAAAAACAAACTACAGTACATTCTCCAAAAATGAAAGCTACAGGACTGGTTTCCTGGACATGAAGGACTTTTGGTTCTTTTGAGACTAGGCTTTAGCTTAATCTAAGTCTGGGAAACCAGTCCTCAGTGGTTACAATACAAACTGGTATTTTCAAAACAACCTAAAGGCCATGGTTTGGTTACTGTTTCCTTTGGTTTAgcaaaatagattaaaaaaatgcagttgAATGGTGTCGTCCAACTTCCTACATTCCCCAGTAGACGCTGGTTTGTAGAGGGAGGAAATCTGTGTAAAAGTTCAATTGAATGAGTGGCTTTCGGTTCCTCCACGTCCAAACCCTTTGGGTCCAAAGAGCGCAGAGTAGCAGGGGTTGTTACAGTACGGCTTTCCCTCGTGCTCTGCATGGGAGCCGGCGGACAGGGTCTTGTTGCATTTCTCACACTTCAGGCAGGGCCTGTGCCAGTCCTTTCCTAGAGATGACACTCTCTCCgCAAAGTACACTTCCTTGCTGCACTTGGGGCACTTAGGCATGGTGGCAGGGTTTGGTAAAGTTCCTGGTCGATGGAAATCCGGTGATGGACACTCTGAGGAGtggagaacagcagcagcagcagcagtggccaCCTGCTTTATACCGCtgtggaagaagaggaggaggaggcacaGGCTGGGTGTGCTctttgtgtttgggtgtgtgtgtgtgactgtgcgGACTTGTATTCA

Function

symbol description
crip1 Predicted to enable peptide binding activity and zinc ion binding activity. Acts upstream of or within heart contraction and heart development. Predicted to be located in cytoplasm. Orthologous to human CRIP1 (cysteine rich protein 1).

NR:

description
cysteine-rich protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110414 True 817 lncRNA 0.46 5 20261599 20272723

Neighbor

gene id symbol gene type direction distance location
elmsan1 elmsan1 coding upstream 15289 20213109 ~ 20246310 (+)
tmem62 tmem62,LOC103132791 coding upstream 61760 20184910 ~ 20199839 (+)
LOC103035446 hadhab,LOC103035446,LOC108425650,LOC100304971,LOC107594700,LOC107752738,LOC107679805,LOC107600864,LOC107741851 coding upstream 87290 20161268 ~ 20174309 (+)
LOC103037509 LOC108425602 coding upstream 106917 20150418 ~ 20154682 (+)
LOC103040036 NA coding upstream 433394 19800197 ~ 19828205 (+)
mta1 mta1,LOC107679789,LOC107666257 coding downstream 118647 20391370 ~ 20446806 (+)
tmem229b tmem229b,LOC107752730,LOC107578043,LOC107708331,LOC107679790,LOC107666241 coding downstream 175187 20447910 ~ 20464852 (+)
LOC103044638 LOC108425659,LOC108270359,LOC107679799,LOC107752725,LOC107666266 coding downstream 441700 20714423 ~ 20771645 (+)
slc25a21 slc25a21,LOC107679800 coding downstream 504715 20777438 ~ 20888798 (+)
LOC103021743 nkx2-8,LOC108421114 coding downstream 642543 20915266 ~ 20917239 (+)
G81917 NA non-coding upstream 37931 20222482 ~ 20223668 (+)
G81913 NA non-coding upstream 74446 20185814 ~ 20187153 (+)
G81899 NA non-coding upstream 82069 20149777 ~ 20179530 (+)
G81856 NA non-coding upstream 269870 19990539 ~ 19991729 (+)
G81830 dpysl5,LOC103380375 non-coding upstream 313182 19945135 ~ 19948417 (+)
G81920 NA non-coding downstream 28555 20301278 ~ 20301732 (+)
G81955 NA non-coding downstream 99391 20372114 ~ 20372392 (+)
G81983 NA non-coding downstream 270988 20543711 ~ 20543911 (+)
G82014 NA non-coding downstream 500033 20772756 ~ 20776477 (+)
G82073 NA non-coding downstream 674873 20947596 ~ 20948442 (+)
G81763 NA other upstream 587961 19673127 ~ 19673638 (+)
G81761 NA other upstream 595552 19665736 ~ 19666047 (+)
G81704 NA other upstream 1330845 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 1740652 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 1791964 18460123 ~ 18469635 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 1248184 21520907 ~ 21673438 (+)
G82488 NA other downstream 2084921 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 2957707 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 3602716 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 3636959 23909682 ~ 23973975 (+)

Expression


Co-expression Network