G82014


Basic Information

Item Value
gene id G82014
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 20772756 ~ 20776477 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU110524
TTAAACAGCCCTTTGTagttcctttattttttaatgacattatgccattattgttaatataatacatttgacAGCTTTCCTGATTTTTGGTTGTGACAGCTTTAGGCTCATTTTTGCTCAATGCTAAATGGAGCCTTCAGTCTGTACTCTGTATTCAGTTGTTTCATATTTGTACACATTCTCTGAAAGcgGATATGGATACAGACGGAAACAGCAGCACCACTGGGAATCACGGGGGCAGTGTAGCCAATGGTTCACATTCAACCACTGCCACATGGACACAACAAAAAGGAAACTCTGGCAGAAAAGAAAGTTAGGATGGAAAGTTTTACACCTCTCACAGACGTTTATGAtgtcttttttgtcattattttattttgtacttgTACATTATCATGACTTATTCCAGTGTCTCTATGCTGGATGGTGTCAGAAAATTTGAAGTATGTGTGCAATGACCATTACAAGACAAATTCATTTTTGTATGTAAAAGGAGTGTAAATGAGCCTTAAGaactatacaaaatattttaataaagacagacattttaattaaaacagcaTGGGGATTTGACAGAATTCAAATAACAAATTTTGCAGCTAGATAAGTTCAATTTCtgatataaattaattatatacagCTAGTTGGTTTAATGATATGaacaaattaatgtttttctaataaataaataaataaaacatgtacagtatattacatatttttgccTGGAACTGACTTAAACCTAAACAGCTTCTTTGGTCATACTGTCCAAACCATGCAGTGGAAAAATCATAGATTTCAGAATTTGTCACAGTCATAAATCAGACATGTTTACAGCTGTTTGGACATGTGATGGCATCTGTTAACAGAGCTGTAGTGTAGAGCTTCTAAATGAATTTCAATGTTAGGTAGATAACAGGATGTATTACAGCATTCTGTGATGATACACAGTGTCTTAAGAAGATGACTAATGTAGACGGGAATCAGATCAAAATGTTTTGATTGACTTGAATTCTTTTATGGAACAAACCACTGTCTGAgttttagatatttatttagttttcttattattgctgttttttttttgtctcagcCAGTCTGCAAATAGTTTCTTAAATGTTCTGAGAAGCTTAGGAAGAACCACCTCATTTGCTCATGTCAGATTTAGGTTGTACAtggacagaaacagagaaacgTGCTGTGAAGGCACCAAATCTTCCATGCGTTAATGGATGTATGTTGAAATAAAAGGTACAAC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110524 True 1258 lncRNA 0.34 2 20772756 20776477

Neighbor

gene id symbol gene type direction distance location
LOC103044638 LOC108425659,LOC108270359,LOC107679799,LOC107752725,LOC107666266 coding upstream 1111 20714423 ~ 20771645 (+)
tmem229b tmem229b,LOC107752730,LOC107578043,LOC107708331,LOC107679790,LOC107666241 coding upstream 307904 20447910 ~ 20464852 (+)
mta1 mta1,LOC107679789,LOC107666257 coding upstream 325950 20391370 ~ 20446806 (+)
elmsan1 elmsan1 coding upstream 526446 20213109 ~ 20246310 (+)
tmem62 tmem62,LOC103132791 coding upstream 572917 20184910 ~ 20199839 (+)
slc25a21 slc25a21,LOC107679800 coding downstream 961 20777438 ~ 20888798 (+)
LOC103021743 nkx2-8,LOC108421114 coding downstream 138789 20915266 ~ 20917239 (+)
LOC103043023 nkx2-1,nkx2.1,LOC107578306,LOC107582966,LOC107679765,LOC107666245 coding downstream 145060 20921537 ~ 20925668 (+)
mbip NA coding downstream 165231 20941708 ~ 20959391 (+)
cdan1 cdan1,LOC107582945 coding downstream 284218 21060695 ~ 21079622 (+)
G81983 NA non-coding upstream 228845 20543711 ~ 20543911 (+)
G81955 NA non-coding upstream 400364 20372114 ~ 20372392 (+)
G81920 NA non-coding upstream 471024 20301278 ~ 20301732 (+)
G81919 crip1,LOC103034058,LOC106611282,LOC107600860 non-coding upstream 500033 20261599 ~ 20272723 (+)
G81917 NA non-coding upstream 549088 20222482 ~ 20223668 (+)
G82073 NA non-coding downstream 171119 20947596 ~ 20948442 (+)
G82089 NA non-coding downstream 242615 21019092 ~ 21019862 (+)
G82088 NA non-coding downstream 245593 21022070 ~ 21022572 (+)
G82090 NA non-coding downstream 246527 21023004 ~ 21023858 (+)
G82091 NA non-coding downstream 247658 21024135 ~ 21025804 (+)
G81763 NA other upstream 1099118 19673127 ~ 19673638 (+)
G81761 NA other upstream 1106709 19665736 ~ 19666047 (+)
G81704 NA other upstream 1842002 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 2251809 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 2303121 18460123 ~ 18469635 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 744430 21520907 ~ 21673438 (+)
G82488 NA other downstream 1581167 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 2453953 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 3098962 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 3133205 23909682 ~ 23973975 (+)

Expression


Co-expression Network