G82090


Basic Information

Item Value
gene id G82090
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21023004 ~ 21023858 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU110608
CCTTTTGctcaaataaaatacaacatgTCCCTTCAGGGTTCCATTATGTTCAGACTGATGCTGAACAAtttctaaaaacacacaaaatcacacaaaagtTTAAAgcttattcttttctttttgttataaAAAAGCCCAGGTTTTGCATTGAGCTTCATTGCTACAGAtcaaagctctggaaaaaaatctaatcaacacagaatacatttaaaatgaaattttctTAATGATTTTTCTTTCACATCCACAACAGACACTAGCCCACCTGGGGCATCAGAGCCTTCCAATACAGGGGACGACACAGAAGGCTTTTCAAACAATAttcaaaaacacagattttacaCAGTGTGGGAGTGTAGGCAGCTTACGCAGCTGGATGCAACTCAAGTCACCCAAAGTCTGCAAACCTTTTCCTACTTTAAAAAAACGACCAAACGATCAactgtctttaaaaagtttgaTCTTCCCCACTGAAGCGACATAAGCACATCACCCCGTATTAAAACTTAAGTACAAAAGCTCAGCAATcctctttattcattttaatacaaGTCTTGTCTATGGCCTGTGGAAGCACATAAGAGGTAAGATTTTGCTCTTCAGTCACCTGATAATGCACCTAAAGCcaccatataaacacacacacataacgtACACTACTGTTTAAAAGCTTCCACTTAATCTTTCTTAATTTGAGAACTAAAAAGTTCTCACTAAAAAATTCTCAGAAAATACTTTCTCTGAAGGCTTTCAAATTAAACTGTTCTGGTTTTAACACATATGGTTACATGTGTATAATATTGTAGTCTTGTTCAAAGTCACACATTTTTAAGCTGTCAATACAGTGGCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110608 True 855 lncRNA 0.35 1 21023004 21023858

Neighbor

gene id symbol gene type direction distance location
mbip NA coding upstream 63613 20941708 ~ 20959391 (+)
LOC103043023 nkx2-1,nkx2.1,LOC107578306,LOC107582966,LOC107679765,LOC107666245 coding upstream 97336 20921537 ~ 20925668 (+)
LOC103021743 nkx2-8,LOC108421114 coding upstream 105765 20915266 ~ 20917239 (+)
slc25a21 slc25a21,LOC107679800 coding upstream 134206 20777438 ~ 20888798 (+)
LOC103044638 LOC108425659,LOC108270359,LOC107679799,LOC107752725,LOC107666266 coding upstream 251359 20714423 ~ 20771645 (+)
cdan1 cdan1,LOC107582945 coding downstream 36837 21060695 ~ 21079622 (+)
stard9 LOC108270056,LOC107582944 coding downstream 57606 21081464 ~ 21136907 (+)
LOC103047712 sptb,LOC108425666,LOC107582900,LOC107662651,LOC107730205,LOC107602260,LOC108270244 coding downstream 117915 21141773 ~ 21189268 (+)
LOC103041063 ccdc88c,LOC107582943 coding downstream 170850 21194708 ~ 21279138 (+)
gpr68 LOC108425668 coding downstream 258745 21282603 ~ 21296256 (+)
G82088 NA non-coding upstream 432 21022070 ~ 21022572 (+)
G82089 NA non-coding upstream 3142 21019092 ~ 21019862 (+)
G82073 NA non-coding upstream 74562 20947596 ~ 20948442 (+)
G82014 NA non-coding upstream 246527 20772756 ~ 20776477 (+)
G81983 NA non-coding upstream 479093 20543711 ~ 20543911 (+)
G82091 NA non-coding downstream 277 21024135 ~ 21025804 (+)
G82193 NA non-coding downstream 367304 21391162 ~ 21420420 (+)
G82194 NA non-coding downstream 374828 21398686 ~ 21399884 (+)
G82234 NA non-coding downstream 464154 21488012 ~ 21488214 (+)
LOC111193214 NA non-coding downstream 467843 21491701 ~ 21506791 (+)
G81763 NA other upstream 1349366 19673127 ~ 19673638 (+)
G81761 NA other upstream 1356957 19665736 ~ 19666047 (+)
G81704 NA other upstream 2092250 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 2502057 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 2553369 18460123 ~ 18469635 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 497049 21520907 ~ 21673438 (+)
G82488 NA other downstream 1333786 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 2206572 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 2851581 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 2885824 23909682 ~ 23973975 (+)

Expression


Co-expression Network