G82193


Basic Information

Item Value
gene id G82193
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21391162 ~ 21420420 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU110743
ttattgtgctgcaaagaaacaaacaaaataatacatgaaaattgaaaaaaagatCTGCTGTGCTACGGGAATTCTGAGTCAAATCTTCATCTACCCTCGTTAGAAATCTGCAACATCACCACCAATATCCACAACTCTTGCTTTTTTTACACAAGCATAAAAACACCAGTAGTACACAAACTCAGATGGGTtctatgatttttctttttcatttcctGTTGATAGACTGAGTGAGGAGAAGAAAGGGAGGTTAGGAGAAAAGTTCTCAGAGTTCATTAAGTTTTACTCACCGGAACGCAGGACACGCCCCCTAGCTTATTCCCAACatggaaacagcaatgttccgGAACAAAAAAGTAGGGGAGGAAAAGAACAGCCGACGTGTGGATGAGACAAGCATGGACTGCATCTCTGAACCGTTGTGAAGAGACCAAAACAACAAAACGTGCTGCATGATTTCAGCTGTCTTTGTTTGAAACTCCTATACACTCAATTGCTTTGCTCATCAATAAATTATTAAggtaattaaaaacaataaattaaatcttttcatttttttctctttccaaccttttttgtcttttttttaattctgttttggcAAGTGACACTCAAGTATTTACAACAATACTTGGAGAAtgcactaaaaaataaaagcgtTCACCCTGCGAGACCCTTTCGGATGTGCAGATCCGCCTTAAGCGGAGGCAATCAGTGGCTTTCCTCACTTTAACATCAacagataaaa
>TU110744
ttattgtgctgcaaagaaacaaacaaaataatacatgaaaattgaaaaaaagatCTGCTGTGCTACGGGAATTCTGAGTCAAATCTTCATCTACCCTCGTTAGAAATCTGCAACATCACCACCAATATCCACAACTCTTGCTTTTTTTACACAAGCATAAAAACACCAGTAGTACACAAACTCAGATGGGTtctatgatttttctttttcatttcctGTTGATAGACTGAGTGAGGAGAAGAAAGGGAGGTTAGGAGAAAAGTTCTCAGAGTTCATTAAGTTTTACTCACCGGAACGCAGGACACGCCCCCTAGCTTATTCCCAACatggaaacagcaatgttccgGAACAAAAAAGTAGGGGAGGAAAAGAACAGCCGACGTGTGGATGAGACAAGCATGGACTGCATCTCTGAACCGTTGTGAAGAGACCAAAACAACAAAACGTGCTGCATGATTTCAGCTGTCTTTGTTTGAAACTCCTATACACTCAATTGCTTTGCTCATCAATAAATTATTAAggtaattaaaaacaataaattaaatcttttcatttttttctctttccaaccttttttgtcttttttttaattctgttttggcAAGTGACACTCAAGTATTTACAACAATACTTGGAGAAtgcactaaaaaataaaagcgtTCACCCTGCGAGACCCTTTCGGATGTGCAGATCCGCCTTAAGCGGAGGCAATCAGTGGCTTTCCTCACTTTAACatcaacagataaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110743 True 748 lncRNA 0.38 2 21391162 21394714
TU110744 False 748 lncRNA 0.38 2 21391162 21420420

Neighbor

gene id symbol gene type direction distance location
gpr68 LOC108425668 coding upstream 94906 21282603 ~ 21296256 (+)
LOC103041063 ccdc88c,LOC107582943 coding upstream 112024 21194708 ~ 21279138 (+)
LOC103047712 sptb,LOC108425666,LOC107582900,LOC107662651,LOC107730205,LOC107602260,LOC108270244 coding upstream 201894 21141773 ~ 21189268 (+)
stard9 LOC108270056,LOC107582944 coding upstream 254255 21081464 ~ 21136907 (+)
cdan1 cdan1,LOC107582945 coding upstream 311540 21060695 ~ 21079622 (+)
tmem87a tmem87a coding downstream 493806 21914226 ~ 21926373 (+)
vps39 vps39 coding downstream 507146 21927566 ~ 21948191 (+)
galnt16 galnt16,LOC107707671 coding downstream 535588 21956008 ~ 21994947 (+)
numb numb coding downstream 580193 22000613 ~ 22046430 (+)
exd2 exd2 coding downstream 627194 22047614 ~ 22055411 (+)
G82091 NA non-coding upstream 365358 21024135 ~ 21025804 (+)
G82090 NA non-coding upstream 367304 21023004 ~ 21023858 (+)
G82088 NA non-coding upstream 368590 21022070 ~ 21022572 (+)
G82089 NA non-coding upstream 371300 21019092 ~ 21019862 (+)
G82073 NA non-coding upstream 442720 20947596 ~ 20948442 (+)
G82234 NA non-coding downstream 67592 21488012 ~ 21488214 (+)
LOC111193214 NA non-coding downstream 71281 21491701 ~ 21506791 (+)
G82258 NA non-coding downstream 136997 21557417 ~ 21557995 (+)
G82266 NA non-coding downstream 277911 21698331 ~ 21700510 (+)
G82270 NA non-coding downstream 300209 21720629 ~ 21721378 (+)
G81763 NA other upstream 1717524 19673127 ~ 19673638 (+)
G81761 NA other upstream 1725115 19665736 ~ 19666047 (+)
G81704 NA other upstream 2460408 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 2870215 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 2921527 18460123 ~ 18469635 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 100487 21520907 ~ 21673438 (+)
G82488 NA other downstream 937224 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 1810010 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 2455019 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 2489262 23909682 ~ 23973975 (+)

Expression


Co-expression Network