G82266


Basic Information

Item Value
gene id G82266
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21698331 ~ 21700510 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU110875
cttagcaaccacctattaactgcttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaacaccgtagaaaccaccccagataccatagcaacaccttagcaaccgcatagcaacaccttagcaaccacctagcaacatcttagcaaccaccccagataccatagcaacaccttagcaacaacctagcaacaccctagcaaccacctagcaacaccttagcaactacctggtATATGTTAgcaattgcctagcaaccagttagcaatagcttaacaaccacctggaaaacattagcaactgcctagcaacagcttagcaaccttttcagaaatgatagcaactgcctagcaacacattagcaatcaaaagtttaaccaaaagttttacgatttcagcatttaaacaagcgtttttagatttcagtgtttaatcaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaactaaatgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttttaGCATTTAGCGTTTAGCCAAAAGTTAACAGCATATCAATgactcttcacactcttcagacGGAAAaagcttagcaaccattttaactttttaacgttattagcgttcttttccaagccaacttaaagttcgttcacgaactTTACCTTTTCTAGTTGT
>TU110880
cttagcaaccacctattaactgcttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccgcttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaacaccgtagaaaccaccccagataccatagcaacaccttagcaaccgcatagcaacaccttagcaaccacctagcaacatcttagcaaccaccccagataccatagcaacaccttagcaacaccttagcaaccacctagcaaccacctagaaacaccttagcaacaccttagcaaccaccccagataccatagcaacaccttagcaacaacctagcaacaccctagcaaccacctagcaacaccttagcaactacctggtATATGTTAgcaattgcctagcaaccagttagcaatagcttaacaaccacctggaaaacattagcaactgcctagcaacagcttagcaaccttttcagaaatgatagcaactgcctagcaacacattagcaatcaaaagtttaaccaaaagttttacgatttcagcatttaaacaagcgtttttagatttcagtgtttaatcaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaactaaatgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttttaGCATTTAGCGTTTAGCCAAAAGTTAACAGCATATCAATgactcttcacactcttcagacGGAAAaagcttagcaaccattttaactttttaacgttattagcgttcttttccaagccaacttaaagttcgttcacgaactTTACCTTTTCTAGTTGT
>TU110881
gcctagcaaccactttagaaatgatagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccgcttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaacaccgtagaaaccaccccagataccatagcaacaccttagcaaccgcatagcaacaccttagcaaccacctagcaacatcttagcaaccaccccagataccatagcaacaccttagcaacaacctagcaacaccctagcaaccacctagcaacaccttagcaactacctggtATATGTTAgcaattgcctagcaaccagttagcaatagcttaacaaccacctggaaaacattagcaactgcctagcaacagcttagcaaccttttcagaaatgatagcaactgcctagcaacacattagcaatcaaaagtttaaccaaaagttttacgatttcagcatttaaacaagcgtttttagatttcagtgtttaatcaaacgtttttagatttcagcgtttaactaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaactaaatgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttttaGCATTTAGCGTTTAGCCAAAAGTTAACAGCATATCAATgactcttcacactcttcagacGGAAAaagcttagcaaccattttaactttttaacgttattagcgttcttttccaagccaacttaaagttcgttcacgaactTTACCTTTTCTAGTTGT
>TU110884
cttagcaaccacctattaactgcttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccgcttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacctagcaacaccttagcaaccacctagcaacaccttagcaaccacctagcaacaccgtagaaaccaccccagataccatagcaacaccttagcaaccgcatagcaacaccttagcaaccacctagcaacatcttagcaaccaccccagataccatagcaacaccttagcaacaacctagcaacaccctagcaaccacctagcaacaccttagcaactacctggtATATGTTAgcaattgcctagcaaccagttagcaatagcttaacaaccacctggaaaacattagcaactgcctagcaacagcttagcaaccttttcagaaatgatagcaactgcctagcaacacattagcaatcaaaagtttaaccaaaagttttacgatttcagcatttaaacaagcgtttttagatttcagtgtttaaccaaacgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaactaaatgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttttaGCATTTAGCGTTTAGCCAAAAGTTAACAGCATATCAATgactcttcacactcttcagacGGAAAaagcttagcaaccattttaactttttaacgttattagcgttcttttccaagccaacttaaagttcgttcacgaactTTACCTTTTCTAGTTGT
>TU110887
gcctagcaaccactttagaaatgatagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccgcttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccagttagcaatagcttaacaaccacctggaaaacattagcaactgcctagcaacagcttagcaaccttttcagaaatgatagcaactgcctagcaacacattagcaatcaaaagtttaaccaaaagttttacgatttcagcatttaaacaagcgtttttagatttcagtgtttaatcaaacgtttttagatttcagcgtttaactaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttttaGCATTTAGCGTTTAGCCAAAAGTTAACAGCATATCAATgactcttcacactcttcagacGGAAAaagcttagcaaccattttaactttttaacgttattagcgttcttttccaagccaacttaaagttcgttcacgaactTTACCTTTTCTAGTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110875 False 881 lncRNA 0.38 5 21698719 21700510
TU110880 False 1528 lncRNA 0.41 4 21698719 21700510
TU110881 False 1110 lncRNA 0.38 5 21698331 21700510
TU110884 True 1567 lncRNA 0.41 5 21698719 21700510
TU110887 False 833 lncRNA 0.38 4 21698331 21700510

Neighbor

gene id symbol gene type direction distance location
gpr68 LOC108425668 coding upstream 402075 21282603 ~ 21296256 (+)
LOC103041063 ccdc88c,LOC107582943 coding upstream 419193 21194708 ~ 21279138 (+)
LOC103047712 sptb,LOC108425666,LOC107582900,LOC107662651,LOC107730205,LOC107602260,LOC108270244 coding upstream 509063 21141773 ~ 21189268 (+)
stard9 LOC108270056,LOC107582944 coding upstream 561424 21081464 ~ 21136907 (+)
cdan1 cdan1,LOC107582945 coding upstream 618709 21060695 ~ 21079622 (+)
tmem87a tmem87a coding downstream 213716 21914226 ~ 21926373 (+)
vps39 vps39 coding downstream 227056 21927566 ~ 21948191 (+)
galnt16 galnt16,LOC107707671 coding downstream 255498 21956008 ~ 21994947 (+)
numb numb coding downstream 300103 22000613 ~ 22046430 (+)
exd2 exd2 coding downstream 347104 22047614 ~ 22055411 (+)
G82258 NA non-coding upstream 140336 21557417 ~ 21557995 (+)
LOC111193214 NA non-coding upstream 191540 21491701 ~ 21506791 (+)
G82234 NA non-coding upstream 210117 21488012 ~ 21488214 (+)
G82193 NA non-coding upstream 277911 21391162 ~ 21420420 (+)
G82194 NA non-coding upstream 298447 21398686 ~ 21399884 (+)
G82270 NA non-coding downstream 20119 21720629 ~ 21721378 (+)
G82311 NA non-coding downstream 86664 21787174 ~ 21788940 (+)
G82345 NA non-coding downstream 167869 21868379 ~ 21869894 (+)
G82349 LOC108428626,LOC106610771,LOC105015763,LOC107687947 non-coding downstream 177545 21878055 ~ 21878741 (+)
G82336 tmem30a,LOC107581488,LOC107714749,LOC107571817,LOC104951461,LOC107687843,LOC107721815 non-coding downstream 180027 21880537 ~ 21881002 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 24893 21520907 ~ 21673438 (+)
G81763 NA other upstream 2024693 19673127 ~ 19673638 (+)
G81761 NA other upstream 2032284 19665736 ~ 19666047 (+)
G81704 NA other upstream 2767577 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 3177384 18511622 ~ 18520947 (+)
G82488 NA other downstream 657134 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 1529920 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 2174929 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 2209172 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 2438879 24139389 ~ 24142232 (+)

Expression


Co-expression Network