G82311


Basic Information

Item Value
gene id G82311
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21787174 ~ 21788940 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU110952
GTTAAACATTTTCAGTAGTTTTATTGAAAAATGCCTCTTCTGattcagaaataaataagaaaaaaatgctgtgGAATTCACAATGTGCAGTTAAAACATAACGGAGCAATTCTATGACCATAGTCTTGCAACAAATTCCAACTGCTTTTGAGATTgataaaacaaaaggaaaaactatattctgtttttaaaatgtacttactAAATATACAACACAGTCATGCAATTCCATCTTTGGTACAAATGAGCTGTGAGTTGGTATACAACAGATAAATATTTAGAATAATGAAACAAAAGCCAGATCTAACAAGGTCTTTAAAATGAGGATGGAATTACAACTAATAGCCTTCCCTGATGACAAGGAAggcataacaaaataataatggaATTAAAGGTATAAAGGTTATGTTGGCAGTCAGCAAGAAGCAAGTTATGAGGCACAAGCTTGATGATGGATGTTAAACCATTTTAGTTGTCTGTTTAATTGAAACTCATTTACAAGGcacaattagtttatttacaCCTCACCCCCCATCCACTGGTGAACTCAGTTATGAAATCTTCATGGTTAGTAGTTTACATGCTTCTTCAGCAAAGGAAGCTCACTCTTGCTGTTTGTTGCTTTGGAGTTCAAGATGCATCAGGCCACTGTACGTGGCCATCACTGTTGCCTGCCTGATAGAGTAGCGGTCAGCTGGTGTTAGTGGCAGTCCAGTCCTTtctttggtttgatttggttttagAGTTGGTCAGCAAATGTTCATTAATGAAATCCATGATGGTTACCCTTAAAAGCTTATTAGCAAGTGTGCTGATCTCTcagacacagttttttttttgaggatttCAATGTTTAAGGGCAGGCAGCTTAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110952 True 874 lncRNA 0.36 2 21787174 21788940

Neighbor

gene id symbol gene type direction distance location
gpr68 LOC108425668 coding upstream 490918 21282603 ~ 21296256 (+)
LOC103041063 ccdc88c,LOC107582943 coding upstream 508036 21194708 ~ 21279138 (+)
LOC103047712 sptb,LOC108425666,LOC107582900,LOC107662651,LOC107730205,LOC107602260,LOC108270244 coding upstream 597906 21141773 ~ 21189268 (+)
stard9 LOC108270056,LOC107582944 coding upstream 650267 21081464 ~ 21136907 (+)
cdan1 cdan1,LOC107582945 coding upstream 707552 21060695 ~ 21079622 (+)
tmem87a tmem87a coding downstream 125286 21914226 ~ 21926373 (+)
vps39 vps39 coding downstream 138626 21927566 ~ 21948191 (+)
galnt16 galnt16,LOC107707671 coding downstream 167068 21956008 ~ 21994947 (+)
numb numb coding downstream 211673 22000613 ~ 22046430 (+)
exd2 exd2 coding downstream 258674 22047614 ~ 22055411 (+)
G82270 NA non-coding upstream 65796 21720629 ~ 21721378 (+)
G82266 NA non-coding upstream 86664 21698331 ~ 21700510 (+)
G82258 NA non-coding upstream 229179 21557417 ~ 21557995 (+)
LOC111193214 NA non-coding upstream 280383 21491701 ~ 21506791 (+)
G82234 NA non-coding upstream 298960 21488012 ~ 21488214 (+)
G82345 NA non-coding downstream 79439 21868379 ~ 21869894 (+)
G82349 LOC108428626,LOC106610771,LOC105015763,LOC107687947 non-coding downstream 89115 21878055 ~ 21878741 (+)
G82336 tmem30a,LOC107581488,LOC107714749,LOC107571817,LOC104951461,LOC107687843,LOC107721815 non-coding downstream 91597 21880537 ~ 21881002 (+)
G82383 erh,ERH non-coding downstream 285602 22074542 ~ 22079050 (+)
G82438 NA non-coding downstream 349556 22138496 ~ 22141716 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 113736 21520907 ~ 21673438 (+)
G81763 NA other upstream 2113536 19673127 ~ 19673638 (+)
G81761 NA other upstream 2121127 19665736 ~ 19666047 (+)
G81704 NA other upstream 2856420 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 3266227 18511622 ~ 18520947 (+)
G82488 NA other downstream 568704 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 1441490 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 2086499 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 2120742 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 2350449 24139389 ~ 24142232 (+)

Expression


Co-expression Network