G82438


Basic Information

Item Value
gene id G82438
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 22138496 ~ 22141716 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU111124
GCAGTGATTTTATTGATGATTTATTACAACGGAATATAAACTGTCAAAGAAAGGAGAGAACCTTAAAGAAGGCACTTCTATTGAAAGTGTCCACATATAGTATATTTGATGAGAAACAAAACAAGCTGAAGTAAAACCAAACCCAGAATGTTATGTATATGTGCTATATCTGAAGAGGATTTATTGCTTTTTAGGTTTGTATGATGAGAAACCATCAGTGTGAGACTGCTGATTTGAATAGGTACTGCTTCATATTGCTTTGGAAATTCAAGTACAAACCATTTGATGTTTCTTAATTTCTTCACTAAAACAGTTCACAATGTACAGCAAGCATTGCATTAAGTTGTGCTATGCAATGAGCAATTgtgttgtttatatatattatatacatttgttCTCCATGTACAGACATTTATTGTGACCATAAGAGACATGTATGTTCACCCGGATATCTCACAGTGCTTTATTTTGCTGCATATAACAGGATAATTTTGTGTCTCCGTTCATATAACATCCTCCATGCATCCCATGGATACAGGACCTTATAAAGACCATTTTAAGTCATGATTAATGTAAGGACCAATTAGCTTGTTGGCACCAACTTTCATGCATCATTAACAATGTTAGTTTGAGTAGCATTCAGTTAACATATAGATGTCCTctaagcattattatttatttcacataTGGATTTCCTTGCTAAAGTAGATTACacatacactgatcagccatagcattaaaaccacctgtctCATATTTTATGGGTTTCTCTTGGGCCACAAAAACAATGTTGACCCACGAGGCATGGAATCCACAAGGCCTCTGAAGGTGTCTTGTGGAATATAGCACAAGGCTGGTTATGATaattaataatacttttttttgtaggtGATATTTTAGAACCATATTATGCCAATTATGTATTGAGAATACTGTTCATAATGCAGCATTAAACCCCCTTTAAGGGGTGaatatatgtccatataatatattgtgtcaCCAGGGAGTTGGCttcaaattttacatttttgtaaattgtaAGGTGTGGcttttgacttttgacttgttcatccagcacatcccacaTATGCCCAACCTATCTAAACACTTCTTACATATGTTACTGTTCTGTGTAAGTGAAGAAAATGTATTTGGCTTGAAACAAATGTCCtctccaaaacaacaaaactaatGTATGTATTGAAATCCGCTCACCATAGATGCTGATAATTAGAGATCagagcagtaaaaaaaatctaaatctaaattatattaattctaGAAAATGGATAgctagaaaaaaacatataaaatattgaaataaataaatgtattatactaATGCCAAGTTGGTACAGCTGGTTCTTGCAAAATGAGCTCAACTCACGTAAATATAGAAGAAATCATTTTCTTTTGCTCAGAATTTTCTTAAACTAAAAATGGCTTTGCCCTTTTCTTATATAAGTCAGGCATtgcattacataaaatatgGCCAACTTCATTAtgaaacagcttttttttccttttgtttctttttcaagTGAATGCAGAAGGTGGAAACATTTGTGCTTACCTTTGCGTCATAGTCCTTCATTTGAAATAGTGAGTGTAGCTATTGtgccatttcatttcattttcatggTTGCAAGTACATTCAAATATATAATGCACATAAACATGGCTTAGTTAGGTGACAGTCATTAATAGTTTCTATTTACATGTGGAATTATGCAGGATTCAAAGCATATTTCAGTATTAAAAGCATATTtgattaacagtaaaataaatagtaatggTTTGCATTGCACATAGACAATCACAGACTGTATAGTAAAATGGTCAAACTAGCAAAGGTGATTAAATAACTGATATATGCAGGAGATGCATAACAGGGTTGTGAAATTCAACATGATGCATTGATTTCAATCCAAAGAATACttagatactgtagatactgcACATTATATTCTGGCTATGTTCACATGACCAGCCAAGTAACTCAAactttttcatggctgtgtggaTGTATGACTAATGTTTCTTAGATCAGGTTTGAGTAACctgtaacatattttaaattctacaaGGTAGTTATTTACAAGACCAGACTCCAAACACTATACATTTGAAACAGAAATGTGACCTTCGGTTTTGAGGGTTTCCCAAACATAATGTAAATTACTGATCAACGTAGTGTTCGGtgcaaaaatgcacaaaaaacataatttttcgTTTTGCTCTGACTTGAATGCTTGCACAAACCTCTACAATGATAGGGGGATTTTTGTTGGACccctctattttttttaagggtgGGACTCTATCCACTCCCAATCATATTCCAAACAGTGTCCAGTCTCCTTGTTATCAATGTCTTTGTGATTGTATGCTGTtttagggacagatttgttcacattacagacAAAGACAGGTCAATAACAGTAACTTGTATCTGCCTGTTATACAAGAACcatcaagatagccaaatcgaatctatgcaaaaaaacatattatttctgattgtaatgtgaacatagcctttgaTGTAGTATTTCCAAGTATTCTTTGGATAAGAGGCAACAAACATCAGTAAAACATGAAATGTGCTCTAATGATAAGTGCTACTGGAACAAATGGACAGCTATATGCCTCTTAGTAAAAATGAAGGTATGGCATTAACAGCCATTGTAAAGGGCATAAAGACACCATATCTGTATGGTGTGCAAAAGGTTCACGGTCTTCATCTGCTCACAGCAGGCCACAAAGCTGGATGACTGTCTTTTTGGGCAGTTCCAGGGCAACCATCTCATTTGAGGCTGATTGAATTTAGCCTGTCCTTCCGAGTGCTTACCTAATCACCCAAAGCCAAggaggcatcacgttctccCATGTCCACGTAGCTCTTGGCTCTTCAGTCACCCACTCTCCATCATCTGGCACTCCTTCCACAGAGCATGGGTGGAGAATGGTGTTGCCCTGTCAGTCCAGGTGCAGTCACTGCATGGTGAGCCAGATCCAGCAGCCCCACAGGATTTGCTTGAGCTGCAGCAGGTAGACGGCCAGCGCTGCCTGCAGTTCCTCACAGGCACGGTGTGGCCGCCGGCGGTCAGTGCAGTACAGGGCAAAGCCCAGTGCAGAAAGCAGCAGGAACAGGCAGGTCAGCAGGGCTAGATATGGCCGGCTCTGGGAGGAGTCATAGGC

Function

GO: NA

KEGG:

id description
ko04742 Taste transduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU111124 True 3201 lncRNA 0.37 2 22138496 22141716

Neighbor

gene id symbol gene type direction distance location
tmem179 tmem179,LOC107679825,LOC107569011,LOC107732500,LOC107602274,LOC100537383 coding upstream 3199 22130946 ~ 22135297 (+)
LOC103041179 NA coding upstream 10355 22111114 ~ 22128141 (+)
ubr1 ubr1 coding upstream 34845 22081687 ~ 22103651 (+)
exd2 exd2 coding upstream 83085 22047614 ~ 22055411 (+)
numb numb coding upstream 92066 22000613 ~ 22046430 (+)
LOC103037751 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding downstream 449853 22591569 ~ 22594357 (+)
edrf1 edrf1,LOC107729289 coding downstream 485588 22627304 ~ 22637793 (+)
tonsl tonsl coding downstream 497017 22638733 ~ 22663127 (+)
LOC103036290 psmc1,LOC108443803 coding downstream 545015 22686731 ~ 22692160 (+)
akap6 akap6 coding downstream 569366 22711082 ~ 22844378 (+)
G82383 erh,ERH non-coding upstream 59446 22074542 ~ 22079050 (+)
G82336 tmem30a,LOC107581488,LOC107714749,LOC107571817,LOC104951461,LOC107687843,LOC107721815 non-coding upstream 257494 21880537 ~ 21881002 (+)
G82349 LOC108428626,LOC106610771,LOC105015763,LOC107687947 non-coding upstream 259755 21878055 ~ 21878741 (+)
G82345 NA non-coding upstream 268602 21868379 ~ 21869894 (+)
G82311 NA non-coding upstream 349556 21787174 ~ 21788940 (+)
G82465 NA non-coding downstream 92787 22234503 ~ 22234891 (+)
G82476 NA non-coding downstream 143347 22285063 ~ 22285341 (+)
G82487 NA non-coding downstream 213925 22355641 ~ 22356086 (+)
G82493 NA non-coding downstream 224524 22366240 ~ 22368956 (+)
LOC111193141 NA non-coding downstream 252279 22393995 ~ 22409035 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 465058 21520907 ~ 21673438 (+)
G81763 NA other upstream 2464858 19673127 ~ 19673638 (+)
G81761 NA other upstream 2472449 19665736 ~ 19666047 (+)
G81704 NA other upstream 3207742 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 3617549 18511622 ~ 18520947 (+)
G82488 NA other downstream 215928 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 1088714 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 1733723 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 1767966 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 1997673 24139389 ~ 24142232 (+)

Expression


Co-expression Network