G82488


Basic Information

Item Value
gene id G82488
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 22357644 ~ 22358135 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU111179
CAGCCCAGTCACTGTACTCAGGGGTGGGGGGAGGGTGCCCTAATAATAAAGTTGCATTCTGTAACTCAGGGCGAAATAAAAATGTCCAgcccacaaaaaaaatgtgttgcactCCAAATTTCAGCCACAGGAGGGCTCCGCCCCTCCACGAGTAGCATATCATCACAGCCGGCTCGCTGCACGTGCAGCAAACTGGCGCGCATGCGCAGTCTCGCCCTGGGTAGAGCGGACTGTTGCCATGGGTTACCGCTTGCAGTTTCGAAAGCGCCCCCCCCGCTTTTCCAGCGTGGTGTACACGCAAGTGTCACTCAACGCTGCGGCGGTGCTCAGAGAGGAGATAGAAACTCTTCTTTGCAAGCAGGCGATCCGTGTAGTTCCTCAGGCCGATGCACAAAGAGGCTGGTACAGCCGTTATTTTGTGGTGCCGAAGAGGGGCGGGGGGTTACGTCCAATTATGGATTTAAGAACATTAAACAAGCATTTAAGAGTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111179 True 492 TUCP 0.53 1 22357644 22358135

Neighbor

gene id symbol gene type direction distance location
tmem179 tmem179,LOC107679825,LOC107569011,LOC107732500,LOC107602274,LOC100537383 coding upstream 222347 22130946 ~ 22135297 (+)
LOC103041179 NA coding upstream 229503 22111114 ~ 22128141 (+)
ubr1 ubr1 coding upstream 253993 22081687 ~ 22103651 (+)
exd2 exd2 coding upstream 302233 22047614 ~ 22055411 (+)
numb numb coding upstream 311214 22000613 ~ 22046430 (+)
LOC103037751 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding downstream 233434 22591569 ~ 22594357 (+)
edrf1 edrf1,LOC107729289 coding downstream 269169 22627304 ~ 22637793 (+)
tonsl tonsl coding downstream 280598 22638733 ~ 22663127 (+)
LOC103036290 psmc1,LOC108443803 coding downstream 328596 22686731 ~ 22692160 (+)
akap6 akap6 coding downstream 352947 22711082 ~ 22844378 (+)
G82487 NA non-coding upstream 1558 22355641 ~ 22356086 (+)
G82476 NA non-coding upstream 72303 22285063 ~ 22285341 (+)
G82465 NA non-coding upstream 122753 22234503 ~ 22234891 (+)
G82438 NA non-coding upstream 215928 22138496 ~ 22141716 (+)
G82383 erh,ERH non-coding upstream 278594 22074542 ~ 22079050 (+)
G82493 NA non-coding downstream 8105 22366240 ~ 22368956 (+)
LOC111193141 NA non-coding downstream 35860 22393995 ~ 22409035 (+)
G82515 NA non-coding downstream 191730 22549865 ~ 22551789 (+)
G82579 eapp,LOC107733856,LOC107729290 non-coding downstream 769818 23127953 ~ 23194290 (+)
G82583 NA non-coding downstream 805878 23164013 ~ 23165063 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 684206 21520907 ~ 21673438 (+)
G81763 NA other upstream 2684006 19673127 ~ 19673638 (+)
G81761 NA other upstream 2691597 19665736 ~ 19666047 (+)
G81704 NA other upstream 3426890 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 3836697 18511622 ~ 18520947 (+)
G82609 baz1a other downstream 872295 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 1517304 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 1551547 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 1781254 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 2537759 24895894 ~ 24924815 (+)

Expression


Co-expression Network