G82583


Basic Information

Item Value
gene id G82583
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23164013 ~ 23165063 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU111292
ttaaaagaaatctgtctgatatcacaggtcaatttcagatagtcctgatagtacactacttgtatgtttcactcaattactatcagaacattttgatgtgtcattttaaaataaaggccctttaaattataacatttatgtaattttacacaatatttagACTGTtcttaaaagaaatctgtctgatatcacaggtcaatttcagatagtcctgatagtacactacttgtatgtttcactcaattactatcagaacattttgatgtgtcattttaaaataaaagccctttaaattgtaacatttatgtaattttacacaatgtttagactgttattaaaagaaagctgtctgatatcacagttcaatttcatatagtcctgatagtacactacttgtatgtgtcactcacttaataacagaacattttgatgtgtcatttcaaaataagggccatttaaattgtaacatttatgtaattttacacaatgtttagactgttattaaaagaaatctgtctgatatcacagttcaatttcagatagtcctgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111292 True 550 lncRNA 0.28 3 23164013 23165063

Neighbor

gene id symbol gene type direction distance location
npas3 npas3 coding upstream 9428 22857844 ~ 23154585 (+)
akap6 akap6 coding upstream 319635 22711082 ~ 22844378 (+)
LOC103036290 psmc1,LOC108443803 coding upstream 471853 22686731 ~ 22692160 (+)
tonsl tonsl coding upstream 500886 22638733 ~ 22663127 (+)
edrf1 edrf1,LOC107729289 coding upstream 526220 22627304 ~ 22637793 (+)
srp54 srp54,LOC107729255,LOC107693187,LOC107733904 coding downstream 77108 23242171 ~ 23248849 (+)
sec23a sec23a,LOC107689296,LOC107589610 coding downstream 85597 23250660 ~ 23267862 (+)
clec14a NA coding downstream 143982 23309045 ~ 23312366 (+)
foxa1 foxa1,LOC106611236 coding downstream 200368 23365431 ~ 23368635 (+)
tyro3 tyro3,LOC107693181,LOC107729301,LOC107586589,LOC107689305,LOC107589665 coding downstream 288938 23454001 ~ 23473086 (+)
G82515 NA non-coding upstream 612224 22549865 ~ 22551789 (+)
LOC111193141 NA non-coding upstream 754978 22393995 ~ 22409035 (+)
G82493 NA non-coding upstream 795057 22366240 ~ 22368956 (+)
G82487 NA non-coding upstream 807927 22355641 ~ 22356086 (+)
G82476 NA non-coding upstream 878672 22285063 ~ 22285341 (+)
G82588 NA non-coding downstream 39752 23204815 ~ 23205444 (+)
G82596 NA non-coding downstream 43432 23208495 ~ 23208799 (+)
G82606 NA non-coding downstream 60702 23225765 ~ 23226910 (+)
G82748 NA non-coding downstream 308141 23473204 ~ 23473455 (+)
G82754 NA non-coding downstream 333656 23498719 ~ 23499013 (+)
G82488 NA other upstream 805878 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 1490575 21520907 ~ 21673438 (+)
G81763 NA other upstream 3490375 19673127 ~ 19673638 (+)
G81761 NA other upstream 3497966 19665736 ~ 19666047 (+)
G81704 NA other upstream 4233259 18930238 ~ 18930754 (+)
G82609 baz1a other downstream 65367 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 710376 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 744619 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 974326 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 1730831 24895894 ~ 24924815 (+)

Expression


Co-expression Network