G82588


Basic Information

Item Value
gene id G82588
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23204815 ~ 23205444 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU111297
ATTGCTGACCTCTGGGACACAATCATATATCAACTGAAACACTTAACACTTAACAGCTCATACAGACCTAAAATCAGACCAGGAATGGTGTACGTTGTTGCCATACTTACAATAAATCCAGCATATtcttcattttctacaaatgaGTCATGGAGCCAGATGAATTCTTCATGTTGTCTCACCACTGAAAACTCATTCTGCTTGAAGTTGGGTAGAGTGCTCTTGTATGGACGGTGAACTTCACTTTGTCTCTCTCGCTCAGAGCATCTGAAATGTCCACTTGTAGTGTAGCATCAGTCTGAAGGTCCACATTGACGGCCCTGGGCTGTAAAC

Function

NR:

description
PREDICTED: lysine-specific demethylase phf2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111297 True 333 lncRNA 0.42 2 23204815 23205444

Neighbor

gene id symbol gene type direction distance location
npas3 npas3 coding upstream 50230 22857844 ~ 23154585 (+)
akap6 akap6 coding upstream 360437 22711082 ~ 22844378 (+)
LOC103036290 psmc1,LOC108443803 coding upstream 512655 22686731 ~ 22692160 (+)
tonsl tonsl coding upstream 541688 22638733 ~ 22663127 (+)
edrf1 edrf1,LOC107729289 coding upstream 567022 22627304 ~ 22637793 (+)
srp54 srp54,LOC107729255,LOC107693187,LOC107733904 coding downstream 36727 23242171 ~ 23248849 (+)
sec23a sec23a,LOC107689296,LOC107589610 coding downstream 45216 23250660 ~ 23267862 (+)
clec14a NA coding downstream 103601 23309045 ~ 23312366 (+)
foxa1 foxa1,LOC106611236 coding downstream 159987 23365431 ~ 23368635 (+)
tyro3 tyro3,LOC107693181,LOC107729301,LOC107586589,LOC107689305,LOC107589665 coding downstream 248557 23454001 ~ 23473086 (+)
G82579 eapp,LOC107733856,LOC107729290 non-coding upstream 10525 23127953 ~ 23194290 (+)
G82583 NA non-coding upstream 39752 23164013 ~ 23165063 (+)
G82515 NA non-coding upstream 653026 22549865 ~ 22551789 (+)
LOC111193141 NA non-coding upstream 795780 22393995 ~ 22409035 (+)
G82493 NA non-coding upstream 835859 22366240 ~ 22368956 (+)
G82596 NA non-coding downstream 3051 23208495 ~ 23208799 (+)
G82606 NA non-coding downstream 20321 23225765 ~ 23226910 (+)
G82748 NA non-coding downstream 267760 23473204 ~ 23473455 (+)
G82754 NA non-coding downstream 293275 23498719 ~ 23499013 (+)
G82753 NA non-coding downstream 293592 23499036 ~ 23552919 (+)
G82488 NA other upstream 846680 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 1531377 21520907 ~ 21673438 (+)
G81763 NA other upstream 3531177 19673127 ~ 19673638 (+)
G81761 NA other upstream 3538768 19665736 ~ 19666047 (+)
G81704 NA other upstream 4274061 18930238 ~ 18930754 (+)
G82609 baz1a other downstream 24986 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 669995 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 704238 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 933945 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 1690450 24895894 ~ 24924815 (+)

Expression


Co-expression Network