G82753


Basic Information

Item Value
gene id G82753
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23499036 ~ 23552919 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU111515
atatatatatatatatatatatattttactatatatagtcGAGACATTCTTCTTTCCTTTGGACTTGTGCTCAGTTGTGGGGATGTGAAGGAGATCATGTGTTCACATGCTGCAGCATGTATGTTTCCTTACACACTGATGATGATTTTATGACTATGGCCACGCTCAGACCGCCTGGACCACCCAGAATTCGGCATGGCCGGCCTGCACTACAGACTTGAACCTCACCACCCTACCTCCCTTTTTAACGTGCTTCTGCAGCACCATGCACTCTCCTCTCCGCCACTTCACCTCATTGCCAAATACTGTGCCCTTTTACTAAACAGTAGatctggttgtttttttttatacaggagCAAAGACAGACTGAAGGAACACTTGCATGGCTTGGAGACAGGTGGAGAGACTGGAGCTTTGCTTGCTtgttacagcttttaaatgatgaaTGGAATAATTCCCTGACTCAGCAAAATTGGGCCAACGCctgaaaggctttttttttttttttgctgaacttcCTTATTGAAAAACTGACTAGAATAATGCTCAGTCAGAGTAACTAGGTTTACTTGTCTTAAAAGCCAGATTGTGTTTTTCCCTCATTTATAACTTGCATTATGAGgttgtttttatattgtatatgttgTGTTTGCTGCAGATGTGTGACTGTATTTATTCTCAAGTGATGGGTCAATACCTGGGGCTTCTAGTCCCTGATATACATAATCATATCAGATGTATGACTAGCCCCTTTTTTCTAGATTCACTGTTTATTTGATTATCTCTGCTTGACCATAATGGGGcactttgtagttttataattacagactgtagtcctctatctgtttctcagtgtacgggaccaccacagagcaggtattatttgtggGGTGAGTCATGCTTagtactgcagtgacactgacggtggtgtgttaatgtgtgttgtgctggttggTGACacctgaggtgtttaaaaactccagcatcaCTGCAGTGTCTGCTCAActtataccagcacaacacacacttaacaTATTACCACAATGTCAGTCAGTTAttgattggggaaaaaaaaaaaaaaaacaccacccaAATAGTATCAGCTCTATGGTGGTCCTAACCATTAAAGTACAGGGTGGGCAGAGGTACAAAACAAAGTGCTCCTGTAGGGACAGTAGAGCTGatgaaatgaacagtaaatgTAGAAACacagaggtggtcataatattctgatatgaatgtgtaattttgtacagtgagtgtgtatgtggtaTGTGTGTGCTCTGATACTGGATACCCTTAGTGTCAGTATGGTGCCCGATGAGTGTCACTTAGAAAGGCATCTGCTTTAGAGAGGGAAACAGATATACTGAGGATTTTCTAAAAACGACAGCATCCAAATCTCAAAGGAATTTTGAAGGACTGTTTTGTACATGCCTGagacttttttgtactttaaatTGACATGGCAAATGTCTGAAGAATGTGGGTGCCTTAATTTATAAACCAGCAATTTGTCATTAAGGGGGTTAATATCATTTATAACTCTAAGATGATGTTCTCAATACTGTTTGGATGCTGTCTTCCTCAATATGACTGATGCATACCAGACAGAAAATTTAGATTCAACTGCCATAGAAATATAACGTCCTGGTGACACAGGTAGGACTGTCACACCCTCTAGGCCATCACAAGGCAAATGTCTCATGTCTCAGAAGATCCCATTTACACCTGGTCCCTTATTGCAGAGTTAAAATTAGGATTATATCTGGAAAATGCCATGCAGTAAGTTACTGGAGCAAATTTTAAAACAGCAACCATCTTTAGCACAGCACAGAAGGGGGATACAGTGCTGAACTACCGGTTGCCACATAAGATGATTCGCATATTCAGTCCCACTACCCAGAGATACATTAGACAAGTGATCAAGTGTAAATTCTTGGCTAACATCTAATCTGGATTAGAATGcaccaaacaaaatgaaaatgggtTTGTGGGCCTGCTgccactgctgaaaaaaaaaaatccttacacAACAAAAAACGTCAAACTATTCTCAATTATTCACTTATTCAGCCATACATAAACAGTTTTTGCCagttaaatatttttggttgccaaataattAATCGGTGCATCCCAAATCAGGATACAAATATCATGAAGTAACCATTTGTACACAAAGACTCACAAAATCACCAATCTCCAAAATGACCACTGAGGTTCTGTCCAAGTTTCTCAGGTTTAGATTGAGCCTAGACTCTAGAGTATTTTCACACTTCACACTGATCAAATCTGCCTGACCAAATCCCTCATACTGAAACTGAGTTTACGAGACACTGCATCTAGGTTGAGATAGCTGGGTTTCTCTACCCACTGGCACAaacttcctctttttttcttaatgatAAAGCTAATAGCAATGTACAGAAAAGCACTTTCACTGTAGGAGAGTAGTCATTAAGGTGATAGCATTGGGATACTGTAGGAATACTGTTTCTTTTGGACCTATGTGTACTGTATACTGTTCAGACTTTCTCATATTGTTACAGAATATGGTGCTTGTGCTCAGTGCAGCGTACAGAGCACTACGGAACCTATTTCTTGTTGCCCAcatcaaaaaaagaaagcatTAATCTGATCCTACAATTCCACATCAATACAGACTCCAGTTCCTCTCTCTAGTTTAAGCTTGAGTTCAGTTTTACAAACATCTGCTCAATCTCACTCATACAGTAATGAGCAAACAGACTATTCAGGTATGAGGAGGATTTTGATTTTAGTATGCCAACACAATTCTTATTTCATCTACAgcataagttaaaaaaaaaaagtgctaattTTTATACACACGTATAAATATGCATGAGACCAATAATAGCAACTGAATAAGCAGAGGTATCAGATATGTTTTAAATCAATGGATTAAGCATATTAATCATTTAGCTAAACTGAGTGTACTGAACTGAAGATGTAGGATTGTAGCTAATGCCAGAGGTGGAGTTATTTTACTGCTAGCATGAATCTACTCTGTATGCATGCAGAGCGATGGACTTTAAGGCTGATCTGTTCTCTGAACTAGAATGCATGGTTGAATATTTGACTTGCCTCATAAACAGTCATTCAGCACTTTGCCATTCAGTGCTACCTCTGTGGCTTCCTGGCTCTGTTCTCATCTCCTGTATGGGCAACAAATAACATAGAATAGCATTTAAAATTGGACCAGATGGGTTTAAGACTGTTTCTCATTTGCTTGTTTGCCAAACTCATGGCTTGTTTGTGTTGCATCAATCaacaattacatattttttatcttcattgtcctctggaataaaaaaaatctcaagtatgtgaataaaactgtatttattatac

Function

NR:

description
PREDICTED: transmembrane and coiled-coil domains protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111515 True 3375 lncRNA 0.38 2 23499036 23552919

Neighbor

gene id symbol gene type direction distance location
LOC103028567 NA coding upstream 479 23475259 ~ 23498557 (+)
tyro3 tyro3,LOC107693181,LOC107729301,LOC107586589,LOC107689305,LOC107589665 coding upstream 25950 23454001 ~ 23473086 (+)
foxa1 foxa1,LOC106611236 coding upstream 130401 23365431 ~ 23368635 (+)
clec14a NA coding upstream 186670 23309045 ~ 23312366 (+)
sec23a sec23a,LOC107689296,LOC107589610 coding upstream 231174 23250660 ~ 23267862 (+)
LOC103031726 tbpl2,LOC107729258,LOC107586674,LOC107693101 coding downstream 6133 23559052 ~ 23563050 (+)
atg14 atg14,zgc:113944,LOC106602264,LOC106611244 coding downstream 11207 23564126 ~ 23570689 (+)
LOC103037620 ctbp2a,LOC103037620,LOC108428680,LOC107692786,LOC107589601,LOC107729277,LOC107665110 coding downstream 386991 23939910 ~ 24009312 (+)
LOC103037301 LOC108428614,LOC108269476 coding downstream 459634 24012553 ~ 24019511 (+)
fzd3 LOC108428681,LOC107729283,LOC108270052,LOC107665105,LOC107589599 coding downstream 470623 24023542 ~ 24046622 (+)
G82754 NA non-coding upstream 23 23498719 ~ 23499013 (+)
G82748 NA non-coding upstream 25581 23473204 ~ 23473455 (+)
G82606 NA non-coding upstream 272126 23225765 ~ 23226910 (+)
G82596 NA non-coding upstream 290237 23208495 ~ 23208799 (+)
G82588 NA non-coding upstream 293592 23204815 ~ 23205444 (+)
G82763 NA non-coding downstream 28229 23581148 ~ 23581751 (+)
G82766 NA non-coding downstream 37581 23590500 ~ 23590893 (+)
G82768 NA non-coding downstream 43293 23596212 ~ 23596474 (+)
G82785 kiaa0586 non-coding downstream 216606 23769525 ~ 23772117 (+)
G82813 NA non-coding downstream 351941 23904860 ~ 23905395 (+)
G82609 baz1a other upstream 267718 23230430 ~ 23231318 (+)
G82488 NA other upstream 1140901 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 1825598 21520907 ~ 21673438 (+)
G81763 NA other upstream 3825398 19673127 ~ 19673638 (+)
G81761 NA other upstream 3832989 19665736 ~ 19666047 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 322520 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 356763 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 586470 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 1342975 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 1381245 24934164 ~ 24936186 (+)

Expression


Co-expression Network