G82754


Basic Information

Item Value
gene id G82754
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23498719 ~ 23499013 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU111516
AATCAAGCCACAGCTATTACATTATATTCTAGTgttaattaatgctgtagtaAATATCAGTGCAGGTGTCTAAAATACACACTGGCCATTAGCTTTATCCCACTGTGTATTGAGACTGTAATAAGAGCATGAAAGGGCAGGCTGTCTCGTTGCGTGAGAGGTGTTTGCAGGTTTGCTTAGTGACCTGTTCATCTTAATACTAATCTTGTTCAGTGACTTTACACTAACAGTGTTCCACAGTTGAATACATCTGCTAATTGGAATACAGATATACAAGTAAACAGCATCATAGAGA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU111516 True 295 lncRNA 0.38 1 23498719 23499013

Neighbor

gene id symbol gene type direction distance location
LOC103028567 NA coding upstream 162 23475259 ~ 23498557 (+)
tyro3 tyro3,LOC107693181,LOC107729301,LOC107586589,LOC107689305,LOC107589665 coding upstream 25633 23454001 ~ 23473086 (+)
foxa1 foxa1,LOC106611236 coding upstream 130084 23365431 ~ 23368635 (+)
clec14a NA coding upstream 186353 23309045 ~ 23312366 (+)
sec23a sec23a,LOC107689296,LOC107589610 coding upstream 230857 23250660 ~ 23267862 (+)
LOC103030470 mapkbp1 coding downstream 6643 23505656 ~ 23549535 (+)
LOC103031726 tbpl2,LOC107729258,LOC107586674,LOC107693101 coding downstream 60039 23559052 ~ 23563050 (+)
atg14 atg14,zgc:113944,LOC106602264,LOC106611244 coding downstream 65113 23564126 ~ 23570689 (+)
LOC103037620 ctbp2a,LOC103037620,LOC108428680,LOC107692786,LOC107589601,LOC107729277,LOC107665110 coding downstream 440897 23939910 ~ 24009312 (+)
LOC103037301 LOC108428614,LOC108269476 coding downstream 513540 24012553 ~ 24019511 (+)
G82748 NA non-coding upstream 25264 23473204 ~ 23473455 (+)
G82606 NA non-coding upstream 271809 23225765 ~ 23226910 (+)
G82596 NA non-coding upstream 289920 23208495 ~ 23208799 (+)
G82588 NA non-coding upstream 293275 23204815 ~ 23205444 (+)
G82579 eapp,LOC107733856,LOC107729290 non-coding upstream 304429 23127953 ~ 23194290 (+)
G82753 NA non-coding downstream 23 23499036 ~ 23552919 (+)
G82763 NA non-coding downstream 82135 23581148 ~ 23581751 (+)
G82766 NA non-coding downstream 91487 23590500 ~ 23590893 (+)
G82768 NA non-coding downstream 97199 23596212 ~ 23596474 (+)
G82785 kiaa0586 non-coding downstream 270512 23769525 ~ 23772117 (+)
G82609 baz1a other upstream 267401 23230430 ~ 23231318 (+)
G82488 NA other upstream 1140584 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 1825281 21520907 ~ 21673438 (+)
G81763 NA other upstream 3825081 19673127 ~ 19673638 (+)
G81761 NA other upstream 3832672 19665736 ~ 19666047 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 376426 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 410669 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 640376 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 1396881 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 1435151 24934164 ~ 24936186 (+)

Expression


Co-expression Network