G82785 (kiaa0586)


Basic Information

Item Value
gene id G82785
gene name kiaa0586
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23769525 ~ 23772117 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU111552
CTCGTTGCTGTGCCTGGCTGACTGGTCCCTGTTCCATCCTCGCAAGTAGAGAGAGGATTGGGTCATGGTGGGCAGAAACAACAGGCCTTCTAATCACCTGACCCTCACTTGGGGGATCGTAGTCCATATCCTGTACTCCGTGTAGTGAACTGTTGAAGCTGGTCATCAGGTTGGGCACATTGAAGCCCTCTTCTTCCAAAGCTCTGACTGCAGCCATCTGGCCAGTACTGAGCAGCAGCTCTCCCTCAGAGATGTGTCTGGCTGCAGTCTCAGTCTCAGTCTCAGTGAGGGAAGGGCTGACTTGTGAGCTGCTCTCCTCCACAGATGGAGACtcaggaggagcaggaggagccTCCTTTACTGCTGAAACTGGAGGACTCAGGGGTTTGGATAGGACTGGAGAAGATGGCGGTAAAACTGCCTCTTCATCTTCCTCACGAGCAACTGACAGCACATTT

Function

symbol description
kiaa0586 Acts upstream of or within cilium assembly and regulation of establishment of protein localization. Located in centrosome and ciliary basal body. Implicated in Joubert syndrome 23 and short-rib thoracic dysplasia 14 with polydactyly.

NR:

description
PREDICTED: protein TALPID3 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111552 True 458 lncRNA 0.54 3 23769525 23772117

Neighbor

gene id symbol gene type direction distance location
atg14 atg14,zgc:113944,LOC106602264,LOC106611244 coding upstream 198836 23564126 ~ 23570689 (+)
LOC103031726 tbpl2,LOC107729258,LOC107586674,LOC107693101 coding upstream 206475 23559052 ~ 23563050 (+)
LOC103030470 mapkbp1 coding upstream 219990 23505656 ~ 23549535 (+)
LOC103028567 NA coding upstream 270968 23475259 ~ 23498557 (+)
tyro3 tyro3,LOC107693181,LOC107729301,LOC107586589,LOC107689305,LOC107589665 coding upstream 296439 23454001 ~ 23473086 (+)
LOC103037620 ctbp2a,LOC103037620,LOC108428680,LOC107692786,LOC107589601,LOC107729277,LOC107665110 coding downstream 167793 23939910 ~ 24009312 (+)
LOC103037301 LOC108428614,LOC108269476 coding downstream 240436 24012553 ~ 24019511 (+)
fzd3 LOC108428681,LOC107729283,LOC108270052,LOC107665105,LOC107589599 coding downstream 251425 24023542 ~ 24046622 (+)
LOC103044752 LOC108428615 coding downstream 333095 24105212 ~ 24110198 (+)
ahi1 ahi1 coding downstream 341019 24113136 ~ 24125115 (+)
G82768 NA non-coding upstream 173051 23596212 ~ 23596474 (+)
G82766 NA non-coding upstream 178632 23590500 ~ 23590893 (+)
G82763 NA non-coding upstream 187774 23581148 ~ 23581751 (+)
G82753 NA non-coding upstream 216606 23499036 ~ 23552919 (+)
G82754 NA non-coding upstream 270512 23498719 ~ 23499013 (+)
G82813 NA non-coding downstream 132743 23904860 ~ 23905395 (+)
G82814 NA non-coding downstream 136221 23908338 ~ 23908608 (+)
G82816 NA non-coding downstream 141012 23913129 ~ 23915459 (+)
G82838 NA non-coding downstream 364459 24136576 ~ 24138904 (+)
G83064 NA non-coding downstream 542598 24314715 ~ 24314965 (+)
G82609 baz1a other upstream 538207 23230430 ~ 23231318 (+)
G82488 NA other upstream 1411390 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 2096087 21520907 ~ 21673438 (+)
G81763 NA other upstream 4095887 19673127 ~ 19673638 (+)
G81761 NA other upstream 4103478 19665736 ~ 19666047 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 103322 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 137565 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 367272 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 1123777 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 1162047 24934164 ~ 24936186 (+)

Expression


Co-expression Network