G82811 (psma3,LOC107729246,LOC107725600)


Basic Information

Item Value
gene id G82811
gene name psma3,LOC107729246,LOC107725600
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23909682 ~ 23973975 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU111581
tttattattttttgttttaaacccCCAAAAGTAAACATAGGAATCAATTTGTCCAACTTActacaaaaacatataaaagaaaTTACCAGTCAAGTTTTGAGAGCTGTCAGGGTGCATGAAAAATGTTATACATTGGGTAAGAAGAATTGTCTCCTGTTAGGTAAGCTGATTACATGTTGTCCTCATCAGAGTCATCCTCCTCTTCCAGTGAATTTAGCATATTTCTCAGCCTCTTCTTTGATATCCTTAGGGACCAGCTCATGTCTTCCTTTTGTgaCTTCTCCAACCCAGCTGAGTTCCAACTCGAAGGCTTTATCTTTCACCTCATCGTGTACAATGTAGATTatttttgcaacctCCTTTACCAACTCTCTGCAGGTCATGTCTTTCATCTGAAGTTTCTCAAtttctgtttttgcagcttGCTTGGCTTTTCCAATGGCACACCCCCAGTAACCATATGAAATTCCTGAGGGGTCAACCATATAGAGCTGAGgaccatcatcttcatcatgaGACCCAAGGatgaaaCTGCATCCAAAAGGCCTTACTGCACTGTATAACGTGTAGGCATGGACGTACATAGCAACTCTGTCTGCCAGATGCTTCAAGGGAATGTCATGGCCGTAGTTGGAGCGGAAGTTGGAGGCCTCTTCCCTCGCCACCTCAGAGAGAGATCTGGCATCTGCAAGCAGCCCGGCCACAGcctgaaagacagagaaagtgaATCATTATTCAATactcatattaaaaaaaaaactacacaactCTAACAGTGAAACTCAGACATTCCAACCCCTCCTATCTGTATTGATATTTCAAACTAATATTTTCCGATTTATTGTGTGCTGAAAAAAGGACCAAGCGATACTGGCTGCACtactttaaaactcatttattagatacaattaatgttttaactaaCCCGTGAGCATTTTATGCAAGGACCAGTTAGctaaatagaataataatgtgaaacaaaaaaaaactgaattgctTACAGTTGgttgaaagttaaaaagttaagtcaAATTAATGAAACATTGGTTGCTAAAGTTCTACCATGGTGACTAGTTTAAGTTATAAATGAGGTGCATCAATATCATCAACGGCAGacacagtgaggaaaataagtatttaaacacCCTGCAACTTTGCAAGCTCTCCAACTTAGAAATCATGGAGAGGTCTCAAAATTGCATTATATAGTGAGAGATATAATCTATTAAAAAATCCCaatgtatgaatattttaatattttatttgtgtgttactgctgcaaataaatatttgtacacCTGCCAATATGCAAAAATTCTGACCCTCAAAGACCTGTTAGTCCGCCTCTATAAAAGTTCACCTCCACTTCACTTATTATTCTACATTAGAAGCACCTGTTTGAGGTTGTTAGCTGCATAAAGACACCTGTGCACCCCACACAATCAGTAAGACTCCAACTACTAACACGGCtaagaccaaagagctgtccAAAGACACCAGAGACAAAATTGTAGATCTTGGCTGGGAAGGGCTACGGGGCAATTGCCAAGCTGGTTGGTGAAAAAAGATCAACTGTTGGAGCAATTATTAGAAGATGGAAGAAGCTTAACATGTCTGTCAGTCTCCCTTAGACTGGGGCTCCATGCAAGATCTTGTCTTGTGGTGTATCAATGATCCTCAGAAAGGTAAGGAATCAGCCCAGAACTACACAGGAAGAGCTGGTCAATGGTCCGAACAGAGCTGGCACCACTGTTTCCAAGGTTACTGTGGGTAATACACTAAGACGTCATAgttTAAAGCCATGCATGGCACAGAAGGTCCCCCTGCTTAAATCTGCACACGTCCAGCCCATGATCATTATTATGATCCAGAGGATTCATGGGAGAAcgttctgtggtcagataagaccaaaatagaactttttggtCTTAATTTCACTCGCAGTGTTTGGAGGACGAAGAATGATAAGTACCATCCCAAAAACACCATccctactgtgaagcatgggggtggaagcatcatgctATGGGGGTGCTTTTCTGCACATGGAACAGGACAACTGCGCTATATTAAGGAGAGAATGACCGGGGCTATATAATGCGAGATAACTTCCCTCAGATAGAGCATTGAAGATGGGtcatggctgggtcttccaacatgacaatgacccaaagcacacagccAAGATAACCACGGAGTTGCTCTGTAAGAAGCATATTAAGGTtctggagtggcccagccagtctcTAGACATAAACTCTAAAGAATTTTTTTAGAGGGAGAACAAAATCTGTGTTTCTCAGCGACAGCCCAGAAACCTGGATATTCTGGAGAAGATCTGTGTGGAGGAATGGGCCAAAATCCTGGTGaaaaactacaggaaatgtttgacatctaattgcaaacaaaggcaactgtaccaaatattaacattgattttcacaggtgttccaatacttaTTTGTCGcagtaacacacaaataaattatttaacaaaaatgtatttatattata
>TU111583
tttattattttttgttttaaacccCCAAAAGTAAACATAGGAATCAATTTGTCCAACTTActacaaaaacatataaaagaaaTTACCAGTCAAGTTTTGAGAGCTGTCAGGGTGCATGAAAAATGTTATACATTGGGTAAGAAGAATTGTCTCCTGTTAGGTAAGCTGATTACATGTTGTCCTCATCAGAATACAATTCT
>TU111585
tatctgTCATAGTGGACATGCACCTAAGATGAAAATTTTAGGCCCCTCCATGATAtgatacttattttcctcactgtatatACATGTGTAACATCGTTTATCAGCATTGGCTCAGAATACAACTTATACCATTCCAACATGACGATCAATATTGAAGATGCGCTTGTTGGAGCCTTGCTCGTACAGTTTTGATAGGACCAACTTCTCTACTCCAAACACTACTCCATCTTTGCAGCGGATTCCAATCGCCGTGCTGCTATTTTCTACTGCCTTCATAGCATATTCAACTTGAAATACCC

Function

symbol description
psma3 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in nucleus and synapse. Orthologous to human PSMA3 (proteasome 20S subunit alpha 3).

NR:

description
PREDICTED: proteasome subunit alpha type-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111581 True 2514 TUCP 0.40 9 23909682 23920698
TU111583 False 200 lncRNA 0.32 2 23909682 23973975
TU111585 False 299 lncRNA 0.40 2 23922348 23922860

Neighbor

gene id symbol gene type direction distance location
atg14 atg14,zgc:113944,LOC106602264,LOC106611244 coding upstream 338993 23564126 ~ 23570689 (+)
LOC103031726 tbpl2,LOC107729258,LOC107586674,LOC107693101 coding upstream 346632 23559052 ~ 23563050 (+)
LOC103030470 mapkbp1 coding upstream 360147 23505656 ~ 23549535 (+)
LOC103028567 NA coding upstream 411125 23475259 ~ 23498557 (+)
tyro3 tyro3,LOC107693181,LOC107729301,LOC107586589,LOC107689305,LOC107589665 coding upstream 436596 23454001 ~ 23473086 (+)
LOC103037301 LOC108428614,LOC108269476 coding downstream 38578 24012553 ~ 24019511 (+)
fzd3 LOC108428681,LOC107729283,LOC108270052,LOC107665105,LOC107589599 coding downstream 49567 24023542 ~ 24046622 (+)
LOC103044752 LOC108428615 coding downstream 131237 24105212 ~ 24110198 (+)
ahi1 ahi1 coding downstream 139161 24113136 ~ 24125115 (+)
syne1 syne1 coding downstream 193144 24167119 ~ 24257250 (+)
G82814 NA non-coding upstream 1074 23908338 ~ 23908608 (+)
G82813 NA non-coding upstream 4287 23904860 ~ 23905395 (+)
G82785 kiaa0586 non-coding upstream 137565 23769525 ~ 23772117 (+)
G82768 NA non-coding upstream 313208 23596212 ~ 23596474 (+)
G82766 NA non-coding upstream 318789 23590500 ~ 23590893 (+)
G82838 NA non-coding downstream 162601 24136576 ~ 24138904 (+)
G83064 NA non-coding downstream 340740 24314715 ~ 24314965 (+)
G83071 NA non-coding downstream 375466 24349441 ~ 24350535 (+)
LOC111193226 NA non-coding downstream 383000 24356975 ~ 24367973 (+)
LOC111193227 NA non-coding downstream 598353 24572328 ~ 24576551 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 31912 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 678364 23230430 ~ 23231318 (+)
G82488 NA other upstream 1551547 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 2236244 21520907 ~ 21673438 (+)
G81763 NA other upstream 4236044 19673127 ~ 19673638 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 165414 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 921919 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 960189 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 1056022 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 1186943 25160918 ~ 25329482 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G234713 NA non-coding NC_053135.1 CM020932.1 14302636 ~ 14303850 (+)