G82838


Basic Information

Item Value
gene id G82838
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24136576 ~ 24138904 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU111624
GCTTATCATGGTTTATTGTACATTACAATAATAAAGCAATAGCACAGTTAAAGCCTCACATTCCACACAATTCAAACTGGGCCTGAATAATCCAGAAGAATAGAATTAGAAATCTCTGCATTTGCAAATCATCAAAGCATATACAACACCAAGAACAAGAGAATGCTTGTATCAGCCATCTTCTGTCAACACAGTATCTCTCAGCAAATGTTCAGCTTACACCAGAAAtagaaaaatgaacaaaacagaacaaattgAATAAGGTTGTAAATATACGTAattgctaaataaacaaaacaacaaacatgtATACTCATTTTTACTTACTGATTATAATAAACAGACAAGGAATAACCTAGAACCAGACTAAAATAATTGCCAGTGTAACATATTCTCAATAGGTGGCCTGAAAGTTGCcctattaacaaataaattaaaaaataaatctggtCAAATAGATAAGTAGGCAAGTTTTCTTTCTACAAagtgtaatgaaaaaaaaaaaaaagaatattaaagaTTACATTTAATCTCATTTAAGAATGAGGAGAAAATAAATGGAGGGATGCGCAACATCAGAATCATATCAGTATTGGCAGACGGATGTTTGCATTAAAAGATGATCGGCATCTGAGAGATGTTTCGACTGATGTTTGACTGATATTTCGAACCAGTATACTGTATGATGATGATGTATTTATTGCACTCAGGCAGAGCAGAATGTTTAGGTGACCTACTGtcctacatttattttataattactgCATCTGTAATCCTACAGAAATAAATGTTACTTTTCGCCAAATGTAGtccaaattttattttaaacattttataaatgtttatctgCCTATGGCGATAcatcaaaaatgttgaatatcgGCACCAGCCCCAAATTCCCATCAGCGTGTCCCTCAAAATCTGTATCCAACCTATtttttttatgaccacatttttaaacagtacCTCTATCCAGGTCTAAGTACTTCAGGTCTTGTTCATAATAAATTGCACAGCCAAATGAATCATACTCATTCTGAATATAGTTCAAATTAGAATTATCTTGTAAAAATGCATAATTCTACGCATTTTGTATTAGTGTCATTGTGAACATATTGTTCAAAAACCAAATACTAAATAAGCATACATTTCTATAGCATGTAGTAATATTTATTGACCTGGTGGTAGTATTTTAAACCTATACTTTACAGTGACTGTAATGATATTATTCGAAACCCCCTTCAAAAATCTACATAGTTCTACAGGGAAAACTGCTACTATAACACAGTGCTAAGAACACAGCAAAGATGAGACATATTTAGTATAAAAATGTAAGACACATATGAGCTATGGAAACAGTGGATGTAATGgcacatttaaatgtatgttagTAATGGTGGATGTATGACTACACTTCATAGGGCTGCCCAACATTGCTCAGTGAGATCCATCATCCTACATGGGTTCATTCCAACCCTAACGTCACAACACTCACCTCTAACACTCGCAGCTTCCTGACTTGTTTGATTAAGTAGATTAAGCAGTTCTAGGAATGGAACTAAGCTCTGCAGGATGAGTCGATCCCCAAGAGCACTGTTAGGCACCTCAGCAATAGACAAAATCACAataagtttaaatgtattttcacTCATGGCATCATCCCCTTTGTAGACAATGATAAATAATGTGTCAAATTCATACTTGGAAAACAACCTACAGTAAAGATCCTCAGGGGAATCCCAAAACTGGTATTCATCTTGCATGCACATCACTTTATTTAGCCTTTCATACTGTATATCAATGTTATGAAACATGTACAGATACACactaaaagaaaacaacaaaaaaaaaacataactagcAACTGATCTGTACTAGTTCTAAATTTTCATTCAATTACTTTTTTCTCCCACATGAAGTCTTCCAACATTTTAACTTGCTATTTTGTCCTCAAATgtgagtttaaaaaaaggacTAATATATGGGTGTTTTGACCATATCTGTTCTTAAACCCTCCAAAACAAACTACGCCAAGTTCCTTCTGACTGTTTCCTGCATGTTCCCTCCCAGCACAACACAAGCAGTAGCTACCATATTATGGCAACACAGAGCCTTGCACATTCTTTTTCACAATGGACAATCAGCAAACATTAACTGTGCTGTCTTGACAAGATGGCTAGAACTGTCCCTTATTTAAGCCTCTGAGTCACATTGGCCAAGGCGACAGCAAATGCTTGCACTGCTGAGAATGGGTACTGAAAATCTAGGATGTATGCATTACCATCAATTCTGCCAAACTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111624 True 2301 lncRNA 0.35 2 24136576 24138904

Neighbor

gene id symbol gene type direction distance location
ahi1 ahi1 coding upstream 11461 24113136 ~ 24125115 (+)
LOC103044752 LOC108428615 coding upstream 26378 24105212 ~ 24110198 (+)
fzd3 LOC108428681,LOC107729283,LOC108270052,LOC107665105,LOC107589599 coding upstream 89954 24023542 ~ 24046622 (+)
LOC103037301 LOC108428614,LOC108269476 coding upstream 117065 24012553 ~ 24019511 (+)
LOC103037620 ctbp2a,LOC103037620,LOC108428680,LOC107692786,LOC107589601,LOC107729277,LOC107665110 coding upstream 127264 23939910 ~ 24009312 (+)
syne1 syne1 coding downstream 28215 24167119 ~ 24257250 (+)
rmnd1 rmnd1,LOC107586664,LOC107692687 coding downstream 125541 24264445 ~ 24269866 (+)
LOC103045657 LOC103045657,LOC108428691 coding downstream 132438 24271342 ~ 24275108 (+)
stx11 stx11 coding downstream 160267 24299171 ~ 24302766 (+)
trnal-uaa_1 NA coding downstream 167707 24306611 ~ 24306693 (+)
G82816 NA non-coding upstream 221117 23913129 ~ 23915459 (+)
G82814 NA non-coding upstream 227968 23908338 ~ 23908608 (+)
G82813 NA non-coding upstream 231181 23904860 ~ 23905395 (+)
G82785 kiaa0586 non-coding upstream 364459 23769525 ~ 23772117 (+)
G82768 NA non-coding upstream 540102 23596212 ~ 23596474 (+)
G83064 NA non-coding downstream 175811 24314715 ~ 24314965 (+)
G83071 NA non-coding downstream 210537 24349441 ~ 24350535 (+)
LOC111193226 NA non-coding downstream 218071 24356975 ~ 24367973 (+)
LOC111193227 NA non-coding downstream 433424 24572328 ~ 24576551 (+)
G83116 NA non-coding downstream 480791 24619695 ~ 24619937 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 162601 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 258806 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 905258 23230430 ~ 23231318 (+)
G82488 NA other upstream 1778441 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 2463138 21520907 ~ 21673438 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 485 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 756990 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 795260 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 891093 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 1022014 25160918 ~ 25329482 (+)

Expression


Co-expression Network