G83071


Basic Information

Item Value
gene id G83071
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24349441 ~ 24350535 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU111933
agccAAAATGCATTAGataatacacacaaaacaagTGTTTCAGGTTGTGCAGGGTTAAAATCTTAACATTTTGCCTCTTCTGCAATGCATTCAGAATTAAGCATTCCATGCATCAGGAATAAGACAACAAGCACTTCTCCATAACAGTACTGTAATTTTGCTGGTGTTTTATCAGTACATTAATGCTAAATCCTCTGGTATAAAAGATCAGAACAAGACAAAAGtgtcttttatataaaaatatataatactcaatgttctaaatcacaacaatGGACTGGTAAGAATCCATGCAAATATACAGACATCCACTCCAACTTTGTCAAATTACACAGTTCATCTGCAGCCAATGCAAAACTATGATTAAACTTTCTAACATGCATTTCCATGTTAAACTGAAACTCCGCACACTGACAATGAATGAATTTATGAACATTGATTTCAAACAAACTAatgtatgatatattttaaacattctaGTAACTCAGACTGCTGTAATCAGATTCCTCAAACTTAAAATAGATGAAACTATCAGAACGTTTATCATactaacataaaacaaaaacagaaaagtttTTGTAACTGTAAACccctttttgcctttttttcttcaaaattttGAACATCTCAAACACAAGTACGATTAAGAGTTTTTCAAGTTTCCTTCTGTAGACAGAAATGTCCATTCTTAGTCAGTTTTTCATATTTAGAACCCTGAGAGGAATACAAGATACTTCTGGAAATGTGTCAAACAGCTGCAGAAAATGTGAAGTGACCTGTCTGACAAATAAGCAATTTTTGCTATCTGAACACCAGGAATCCACACCTGTCCTGCAGGCTTTTATGTATAGCTCATTTTATCAAGACAAGACAGCAGTTGAAAAGTAGATTTGTCAAACAGGAAATTAACCAAAAGCATTAAAGGACATACACAACTGTAAGAAAGCAAAACAATACgttttacagattttacagcaaaaaatatcacaaactcataattttttaaa
>TU111934
GTGATGTGTGCTTGACTGTGTGCTTCTTACACAATaggaaatataaaaacaatttgaCCTGTGGATTtcacttttattaaataaatgtagccAAAATGCATTAGataatacacacaaaacaagTGTTTCAGGTTGTGCAGGGTTAAAATCTTAACATTTTGCCTCTTCTGCAATGCATTCAGAATTAAGCATTCCATGCATCAGGAATAAGACAACAAGCACTTCTCCATAACAGTACTGTAATTTTGCTGGTGTTTTATCAGTACATTAATGCTAAATCCTCTGGTATAAAAGATCAGAACAAGACAAAAGtgtcttttatataaaaatatataatactcaatgttctaaatcacaacaatGGACTGGTAAGAATCCATGCAAATATACAGACATCCACTCCAACTTTGTCAAATTACACAGTTCATCTGCAGCCAATGCAAAACTATGATTAAACTTTCTAACATGCATTTCCATGTTAAACTGAAACTCCGCACACTGACAATGAATGAATTTATGAACATTGATTTCAAACAAACTAatgtatgatatattttaaacattctaGTAACTCAGACTGCTGTAATCAGATTCCTCAAACTTAAAATAGATGAAACTATCAGAACGTTTATCATactaacataaaacaaaaacagaaaagtttTTGTAACTGTAAACccctttttgcctttttttcttcaaaattttGAACATCTCAAACACAAGTACGATTAAGAGTTTTTCAAGTTTCCTTCTGTAGACAGAAATGTCCATTCTTAGTCAGTTTTTCATATTTAGAACCCTGAGAGGAATACAAGATACTTCTGGAAATGTGTCAAACAGCTGCAGAAAATGTGAAGTGACCTGTCTGACAAATAAGCAATTTTTGCTATCTGAACACCAGGAATCCACACCTGTCCTGCAGGCTTTTATGTATAGCTCATTTTATCAAGACAAGACAGCAGTTGAAAAGTAGATTTGTCAAACAGGAAATTAACCAAAAGCATTAAAGGACATACACAACTGTAAGAAAGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111933 False 1007 lncRNA 0.32 1 24349529 24350535
TU111934 True 1037 lncRNA 0.33 1 24349441 24350477

Neighbor

gene id symbol gene type direction distance location
LOC103045057 LOC108428617 coding upstream 13212 24317310 ~ 24336229 (+)
trnal-uaa_4 NA coding upstream 38946 24310413 ~ 24310495 (+)
trnal-uaa_3 NA coding upstream 40551 24308808 ~ 24308890 (+)
trnal-uaa_2 NA coding upstream 42008 24307351 ~ 24307433 (+)
trnal-uaa_1 NA coding upstream 42748 24306611 ~ 24306693 (+)
LOC103047809 grm1,LOC108428695,LOC107733655,LOC107692633 coding downstream 33343 24383878 ~ 24403591 (+)
LOC111193225 NA coding downstream 53155 24403690 ~ 24407033 (+)
LOC103021971 stxbp5,LOC108428698 coding downstream 67474 24418009 ~ 24458899 (+)
LOC103022677 LOC108428699 coding downstream 110039 24460574 ~ 24551484 (+)
LOC103024245 LOC108428599,LOC107594136,LOC107693148,LOC107552018 coding downstream 201407 24551942 ~ 24560699 (+)
G83064 NA non-coding upstream 34476 24314715 ~ 24314965 (+)
G82838 NA non-coding upstream 210537 24136576 ~ 24138904 (+)
G82816 NA non-coding upstream 433982 23913129 ~ 23915459 (+)
G82814 NA non-coding upstream 440833 23908338 ~ 23908608 (+)
G82813 NA non-coding upstream 444046 23904860 ~ 23905395 (+)
LOC111193226 NA non-coding downstream 6440 24356975 ~ 24367973 (+)
LOC111193227 NA non-coding downstream 221793 24572328 ~ 24576551 (+)
G83116 NA non-coding downstream 269160 24619695 ~ 24619937 (+)
G83120 lace1,lace1a,LOC108428707,LOC108269919,LOC108239053 non-coding downstream 280338 24630873 ~ 24635198 (+)
G83121 NA non-coding downstream 286071 24636606 ~ 24636882 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 207209 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 375466 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 471671 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 1118123 23230430 ~ 23231318 (+)
G82488 NA other upstream 1991306 22357644 ~ 22358135 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 545359 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 583629 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 679462 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 810383 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 1569022 25919557 ~ 25975283 (+)

Expression


Co-expression Network