G83180


Basic Information

Item Value
gene id G83180
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24838530 ~ 24840128 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU112074
TGATGTGATGAAGCACTCCTCCCCTCAGAGCTGCTGACTGAGCTGCTGTCTGATTGACCCCTGACCCAGCGCTTTGATAATGGGAGCTGCAGAGACCCTTCCTTTTTTCAGGATGATGTAAATCCATACAGGCCTCCTCTTTCAGACCAGGAAATCCAGGCATGGTGTTGAGTGATGCCAGGGGGTTGTCTCCAAAAGAGGCATTTTGCTTGAAAGACAGTAAGTGTGCTGGGTGTGCTTGCTCGTGATGTTGCTGGTGCTGGTACATTTCACTCTGGTTGGGGAATGGATGAAAGTGCTGTGGTTCCTTGAAGTGAGGAGACTGCAGTGGCAATCCTTGACCAATTTGGAAAGCTGGTTGTTCAGGTGCTTTATAGTCCTCGGGGTAGCCAAAGGTTGGTGATCCTGCAGACTGTGGGCCTTCGAGTGGAGATTGCTGAATGTAGTGCCCTCTCTGCTCTTGCTTTTGTGGGGTTAATGAATAATTTGTGAGCTGATTTTGGCTGGTTTGGATCCCTTGGTGCTGGAAAGGATACAGGTTCTGGGACTTGTAAGGGGGTAACTTGTATACCTGCTCTGGTTGGCTTTCCCTGAGCTGTTGTTTGTTCTGCTGATATCCATAATGATATTGCTGATGGTTTTGGTAGAGGTTGTCAGTCATATGTTGGCTGTTTATTGGAGGATATGATTGTTTGTTATGGCCTTGCTGACTCTGCATGGCTACTGGACTAAATGGCTCTCGATCTGACCCATCCGAGGGTGTTGCACTTTGAGGTGAGAGCAAAATCTCTGGTACTTGAGTGTCCTCCAAGCCTTTTTCACCTACACTGTTGACAAAAGCCATGTTTGGGATTTTCATGGAAAAGGCTTTGGAAAAGGAATCTAGCCTTTGCAGAGCACTGGCATTAAACTTGCTAGACAGtccagcattgctgtgagggaTGACACTGAAGGGGTAGACAAAATGGGAACCCATTGCCTCTGTCACTTCATCTTTAGATGAGGAGCCCCACAAACTAGATGCAGACTTCTCCAGTGGATTATAATCCCAGCATCCTCCACTGTGTTGTATGTCAAATAGTAGAGAAGGCTCATTCTGTGGCGTGGCAGGTGATAATGTATGCTTTTGGTTAACATGTGGAGACAATGGACAAGTTTGTAATGAGCTTGCAGTAGGGAAACCATAAGCAGGCGATGCTGATAGACTGTTCTGAAATGAATAGGCTCCATTACTGTCATAGAGGTTCTCTGTCATTTTGGAAAGAATTACAGTAATCAGAGCTTCTTCTTTACTGTGTGTTAATATATTACTCTAGGTTGCTAATTAGCTAATTTGAATGAACAGCAGAACCAACAAAGTTAGGAAGATGGTGATATAGGACAGTAAACAGTCTTTTTCCAGTCATGTTTAGGGTAACTGTGGAATGCTGGCTGTGGAATCAGAGTTCAGAGTTATTCCTGTAGAGAGGAATAGAAGTTCCTTAGACAGAATAAGAAGAAAAGCATAAGCATTCTGTGCAAAAAGCAGAACAATATTCTGGCGGTAAAATGTAGCTATGCATAGCATAATCACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112074 True 1575 lncRNA 0.45 2 24838530 24840128

Neighbor

gene id symbol gene type direction distance location
trnal-cag_10 NA coding upstream 10774 24827674 ~ 24827756 (+)
LOC103046279 NA coding upstream 12430 24814910 ~ 24826100 (+)
LOC103033951 LOC108428726 coding upstream 24721 24807926 ~ 24813809 (+)
LOC103034484 LOC107576683 coding upstream 33145 24799032 ~ 24805385 (+)
LOC103032669 NA coding upstream 45199 24772806 ~ 24793331 (+)
ptk2b LOC108428731,LOC108270138 coding downstream 9448 24849576 ~ 24882752 (+)
gckr gckr coding downstream 141248 24981376 ~ 24997874 (+)
LOC103039108 NA coding downstream 158207 24998335 ~ 25008777 (+)
xkr6 xkr6,xkr6a,LOC108269486,LOC107693112 coding downstream 205585 25045713 ~ 25071105 (+)
enpp4 enpp4 coding downstream 247475 25087603 ~ 25095143 (+)
G83167 NA non-coding upstream 65737 24771882 ~ 24772793 (+)
G83123 NA non-coding upstream 195875 24642392 ~ 24642655 (+)
G83121 NA non-coding upstream 201648 24636606 ~ 24636882 (+)
G83120 lace1,lace1a,LOC108428707,LOC108269919,LOC108239053 non-coding upstream 203332 24630873 ~ 24635198 (+)
G83116 NA non-coding upstream 218593 24619695 ~ 24619937 (+)
G83295 NA non-coding downstream 53115 24893243 ~ 24893639 (+)
G83307 NA non-coding downstream 91791 24931919 ~ 24932539 (+)
G83354 NA non-coding downstream 287832 25127960 ~ 25187909 (+)
G83438 cdc5l,LOC107594083,LOC107552094 non-coding downstream 521599 25361727 ~ 25367281 (+)
G83440 cdc5l,LOC106599718 non-coding downstream 530123 25370251 ~ 25387590 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 696298 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 864555 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 960760 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 1607212 23230430 ~ 23231318 (+)
G82488 NA other upstream 2480395 22357644 ~ 22358135 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 55766 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 94036 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 189869 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 320790 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 1079429 25919557 ~ 25975283 (+)

Expression


Co-expression Network