G83295


Basic Information

Item Value
gene id G83295
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24893243 ~ 24893639 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU112240
TGTCACGAATGaagatggagggatggacgtaagtgcacaatattgtttatttaaacaaactagattataaaaacagaaaacaaaacacgggtagcgcaataactcaaaaaaacaagataaggaTATAAATCTAACTAAGACAAAGACTAGAAAAACTGAGGAAACAtgaaactctaaatataactctaaacataaaataacctgAGAACACAAAGATAACAACCTGAACAAACTTGGAACACTTACATACAGAggacaaggatacaaaagactcaacactgaacgctcaaacagaggggcttaaatacatgaggagagtgaggaacacctgggcttggataacgagggggcagggttacaaacaagacacaggtgagaacactaatagttAGGGCGg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112240 True 397 lncRNA 0.38 1 24893243 24893639

Neighbor

gene id symbol gene type direction distance location
ptk2b LOC108428731,LOC108270138 coding upstream 10491 24849576 ~ 24882752 (+)
trnal-cag_10 NA coding upstream 65487 24827674 ~ 24827756 (+)
LOC103046279 NA coding upstream 67143 24814910 ~ 24826100 (+)
LOC103033951 LOC108428726 coding upstream 79434 24807926 ~ 24813809 (+)
LOC103034484 LOC107576683 coding upstream 87858 24799032 ~ 24805385 (+)
gckr gckr coding downstream 87737 24981376 ~ 24997874 (+)
LOC103039108 NA coding downstream 104696 24998335 ~ 25008777 (+)
xkr6 xkr6,xkr6a,LOC108269486,LOC107693112 coding downstream 152074 25045713 ~ 25071105 (+)
enpp4 enpp4 coding downstream 193964 25087603 ~ 25095143 (+)
clic5 clic5,LOC105909474,LOC103355727 coding downstream 204400 25098039 ~ 25109750 (+)
G83180 NA non-coding upstream 53115 24838530 ~ 24840128 (+)
G83167 NA non-coding upstream 120450 24771882 ~ 24772793 (+)
G83123 NA non-coding upstream 250588 24642392 ~ 24642655 (+)
G83121 NA non-coding upstream 256361 24636606 ~ 24636882 (+)
G83120 lace1,lace1a,LOC108428707,LOC108269919,LOC108239053 non-coding upstream 258045 24630873 ~ 24635198 (+)
G83307 NA non-coding downstream 38280 24931919 ~ 24932539 (+)
G83354 NA non-coding downstream 234321 25127960 ~ 25187909 (+)
G83438 cdc5l,LOC107594083,LOC107552094 non-coding downstream 468088 25361727 ~ 25367281 (+)
G83440 cdc5l,LOC106599718 non-coding downstream 476612 25370251 ~ 25387590 (+)
G83441 NA non-coding downstream 484932 25378571 ~ 25379291 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 751011 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 919268 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 1015473 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 1661925 23230430 ~ 23231318 (+)
G82488 NA other upstream 2535108 22357644 ~ 22358135 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 2255 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 40525 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 136358 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 267279 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 1025918 25919557 ~ 25975283 (+)

Expression


Co-expression Network