LOC111193228


Basic Information

Item Value
gene id LOC111193228
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24934164 ~ 24936186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU112274
ATAGACTGcgtgattacaataaaataatgtgcacATGTAGACAAACCTACTTCTCcagcattattaacaataatattaacaatagcaAAGTTCTTTTCACTGTGGTTGACAGACTAACTAACTCACCTATATATATGACCCCTGAGCTAGTTTCAACTGAGAGATGTAATGAGTTTGctaaattttttaatactaaaatccacAATATCAGACAAGCCATCAGTACATCTTTATCCACCAAGGAGCCCATGTGCTCTCCAAAACCATGCAAAAGCATCATAGTCAACATGTGCCAGTTTAGCACTATTAATGAAGAAGTTTTAATTGATACAGTGAGTCACCTCAGATCATCCACTTGCAGTCTTGATACATTACCAACcaagtttttaaagaatgttttttactcAATATCAGAAGACATTCTTCAAATTGTAAATACCTCACTCATGTCAGGTGTTTTcccaaatgcattaaaaac
>XM_022673022.1
TCCTAtctaattaatgattttattacaaattatgggcttgattttctgtttttaacagagACATGGCTAAATTCTTGTAGTGCTGAAAGTGTATTAATTGAGTcggctccaccaaactttaactttttaaatgtctcacGTACCGGCAAGAAAGGTGGAGGTGTAGCTATGCTGTTTGATGATACTTTCCAATGCAAGCAGTTATCACTTGGTGACTTCACATCTTTTGAATATTTAGGTGCAGTTTTAAAAGGGACACCaagaatattactaataattgtCTACAGGCCTCCAAGGTACAATGCTgattttattgatgattttacagatatgctgtcttttatttctactgaatttgatcattttattattgctggtGATTTTAACATTCATATTGATAATTCCAAGGATAATTATGCCAGAGAACTCTATGATGTATTTGACTCTTTTGAACTCTCTCAGCATGTGACTGGAAGCACACACATGGTCACACCCTGGATTTGGTTATTTCGAAGGGTCTCAACATATCAGCTTCTATTAAGGATGTTGCACTGTCAGATCACTACTGTGTCTTCTTTGAAATGTGGACTTCAATACACAGTGAAACCAGACAGATTAGGTACAAGAAAAGGCAGATAAATGACATGACAGCTGAACTTTTTGTGAGCAAAGTGTGCTCTGCACCATGCAAACCATCAGACTCTGTAGATACTCTGCTGGATAGTTTTAACTCAAAAACTGCTAGAGTTTTAGATGAGATTGCACCAGTTAGAGTTAAAACCATGCCGTGCAAGCAGAAAGCACCATGGagaaatgatgctgcagttcagcTCCAAAAGAAAGAATGCAGAAAGGCTGAGCGCAGATGGTGTAAAACCAAGCTTCACATTCACAAAGAATTTTTTAAAGATAGACTGcgtgattacaataaaataatgtgcacATGTAGACAAACCTACTTCTCcagcattattaacaataatattaacaatagcaAAGTTCTTTTCACTGTGGTTGACAGACTAACTAACTCACCTATATATATGACCCCTGAGCTAGTTTCAACTGAGAGATGTAATGAGTTTGctaaattttttaatactaaaatccacAATATCAGACAAGCCATCAGTACATCTTTATCCACCAAGGAGCCCATGTGCTCTCCAAAACCATGCAAAAGCATCATAGTCAACATGTGCCAGTTTAGCACTATTAATGAAGAAGTTTTAATTGATACAGTGAGTCACCTCAGATCATCCACTTGCAGTCTTGATACATTACCAACcaagtttttaaagaatgttttttactcAATATCAGAAGACATTCTTCAAATTGTAAATACCTCACTCATGTCAGGTGTTTTcccaaatgcattaaaaacagccgTTGTGAAGcctctcttaaaaaagaaaaaattatatacaaacTTATTGAACAATTACAGAACAATCTCTAATCTACCAttcattggaaaaataattgaattgCTGCTTTTGATACCATTGACCACAACATTCTCATAGATAGACTTGAGAACCGGGTTGGAATTTCTGgAACTGTCCTAAAATGGTTCAGTTCATACCTTCAAGGAAGGAAATACtttgtggaaatggaaaataatgtttctgagactgtgcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112274 False 478 TUCP 0.34 1 24935073 24935550
XM_022673022.1 True 1645 mRNA 0.36 2 24934164 24936186

Neighbor

gene id symbol gene type direction distance location
ptk2b LOC108428731,LOC108270138 coding upstream 51412 24849576 ~ 24882752 (+)
trnal-cag_10 NA coding upstream 106408 24827674 ~ 24827756 (+)
LOC103046279 NA coding upstream 108064 24814910 ~ 24826100 (+)
LOC103033951 LOC108428726 coding upstream 120355 24807926 ~ 24813809 (+)
LOC103034484 LOC107576683 coding upstream 128779 24799032 ~ 24805385 (+)
gckr gckr coding downstream 45190 24981376 ~ 24997874 (+)
LOC103039108 NA coding downstream 62149 24998335 ~ 25008777 (+)
xkr6 xkr6,xkr6a,LOC108269486,LOC107693112 coding downstream 109527 25045713 ~ 25071105 (+)
enpp4 enpp4 coding downstream 151417 25087603 ~ 25095143 (+)
clic5 clic5,LOC105909474,LOC103355727 coding downstream 161853 25098039 ~ 25109750 (+)
G83307 NA non-coding upstream 1625 24931919 ~ 24932539 (+)
G83295 NA non-coding upstream 40525 24893243 ~ 24893639 (+)
G83180 NA non-coding upstream 94036 24838530 ~ 24840128 (+)
G83167 NA non-coding upstream 161371 24771882 ~ 24772793 (+)
G83123 NA non-coding upstream 291509 24642392 ~ 24642655 (+)
G83354 NA non-coding downstream 191774 25127960 ~ 25187909 (+)
G83438 cdc5l,LOC107594083,LOC107552094 non-coding downstream 425541 25361727 ~ 25367281 (+)
G83440 cdc5l,LOC106599718 non-coding downstream 434065 25370251 ~ 25387590 (+)
G83441 NA non-coding downstream 442385 25378571 ~ 25379291 (+)
G83446 NA non-coding downstream 527714 25463900 ~ 25464253 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other upstream 9349 24895894 ~ 24924815 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 791932 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 960189 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 1056394 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 1702846 23230430 ~ 23231318 (+)
c9h8orf74 NA other downstream 93811 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 224732 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 983371 25919557 ~ 25975283 (+)
G83602 NA other downstream 1299312 26235498 ~ 26253602 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other downstream 1338815 26275001 ~ 26305383 (+)

Expression


Co-expression Network