G83354


Basic Information

Item Value
gene id G83354
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 25127960 ~ 25187909 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU112322
TTTtaacaaaatgcagtttttattcTCCAAGACCAATGATACAATCATTAGAAATGTTTGAAAATCTCACAATTTTTACAGGATTGTTAGTCCCACTGAAGCTGGTGAAAAGTCCACAAAGAAAAGAGTCGAATTAATGAAACGACATGAACGAGACAGAAAACCAGGCACGGTGACTGACCAACCCGACATAAAGATCTGTACAGTATGTGCATGAAAAAGCAATGGTAAACAACATCAACGGAAACAGAAAATGTTCTGCAGCAGTTTACAAACGAAACATTTATGAAGATTATTCAAAAACATGGATATTCTTTCATCAATAAAAGTGTGGAACGGGTTTTTTTCCAGAATATTACATACAAAACACTGCATCTGAGAGACCTTTCTAACCTGATTTAGAGCTAGAGTGCAACAACTCGAACACGCTGCTGAACTCTCTGAAGAACTGCCAAAAACATCTATATGTTCTGATGGAAAGGTGTTaatctgctaatgctaatgctttagACATAAGATTATTATTATGCGTTATGCATGTCCTCTGTGAGATCATCTACCCACCTCCCAGCCTGTCTGTAGGCCCAACTTTACATCCACAACATATCATCGTGTTTAATGAGTTACTGATGAAACTCAAGTACAGTAACCCCTGAAGAACTATGAACCTCAACCAACCAGACGTCTCCGTTTGGGCTGGATCTCACccgcaaaaatgaaaaattgtggAGTTAAATTCGGCAGCGGATTTGCTGACCACAGCTCCTGATGAACATTACTCATGGGGCATTTCTAAAGCTCAGAATTCCTCAGCCACACATTCGTCAACTGCTTGACGCAAACCCTCGACCGTCTGTAATCGCTCGCACGACTTTGGCTCGGAGATGCaaccaaaaacatttggttatTTAAAGACATACCAAGCTGAACTTTTGGTAATATTAAACACTGCCATAAAGCAGTTATTAGAAATATGTAATAACATGGTAACAGTGCACAGCTCTTTAAGTCGCAGTACTGTAAACATGTTCGCTCTTCTCACAGCCGAAAAAAAGGACAAGATTTTATAAAAGGAAGGAATCAAACTAAGGGGCGGATGCTGAAAAGCCATGTGATCACTCTGAGGTCTGTCTTTAATGAGGCTATGGTCAGACTGACAGTCCAAATCCAGTTTTAGACGTATTTAAATTGTATCCATGGTGATTTTTGATGGACTGacagaaaccacatgaaataTGATTTTTGCTAATCGAATCCAAACCTCATTTAGAGGTGGTTTGAAACTCGATTACAGTCAGATTTGTACAGATGCGTCTCAGTCTGAACACTCTggttaagataaaaaaaaaccccgAGCTCATTCACCTCTAATCAGAGAAGATTAGAGATCatcagaaacacagaggagcaaTGTGGAAATAACTAGAATCAGCATCGTGCAGATACACTTACTACAGTATCTCCAGACACACAAAACTAATCTGATCACCTGCAAATACCAGTGCAGACAGTCATCCcatcagatctgatttgaaaaacaattaaatccGATTCGCCTgtagtctgaacacagcctcAGTCTAACCCTCAGCCAGTCCACATTATGCTCTAATTAAAATACCCGACTATtatcaacattattattattattgagatTATTATTGTGCCCTACTGTAACATAAAACCACacccacatccacacacacacacacacagagagagctgGATATcaatattcagtatttttataAAACTGACCAAACTGTTTGAATAATACTGAATAACACAGAATTCCATGTCATTCAATACCAATTTCTAATAGTCAGTAGAAGTCTTTATCAGCATCAGAGAGCAAGTACACTTCCTGCtccaaaatctaaaaaattCAGAGCGGTCCGCAAGTTTTATCTGAGATCATACATATAATTAGCATCTAATTAACACAGAATGATATTTTGATACATAACTTATACAAAGATCAGCATTAACTTAATATTGTGTATGTCCCTCCTGTGACACCATAACAGATCTGACCATTTGAGGCAAGGACTGCACAAGACCTCTAAAATGATGAgttgctttgattttaccaaatttaaaacttctggaatataatcaagctgaactgcttgaattgttgcatcaggagtggcataaagttattcaaaagcagtgtgtaagactggtggaggagaacatgccaagattcattaaaactgtgattgaaaaccagggttattccaccaaatattaatttctaaactcttaaaattttatgattttgaacttgttttctttgcattatttgaggtctgaaagctctctccatgtttttattattttagacatttctcattttctgcaaataaatgctctaaatgacaatatttttatttggaatttgggaggaatgttgtctgtagtttatagaattaaacaacaatgtttatttttctcaaatatatatctataaatagcaaaatcagataaattgattcagaaactgaagtagtctcttcattttttcagagctatagaTACCAGATAACATTTTATCTTCATTTTGAATAGCTTTTTTTCAATAAGGAGTGGAGTGTTTACAGCACGTTCAATAGCATCCAACACATTTTAATGTgaacaagcattgtcctgttgaaatggTGCACTGGAGTGGGAATTAAAAAAAGctagggccactggttgcaggaccaaTTTCACTGTATCATTGTAAactaattattatcattatcagtaccaataaaatatttgaataacatccagccctacacacacacgcacacaaaccaaaatattgattgttttagattatgtacagtatattatttaaCTTGCTCCTGTTTTCATGACCTTGTGTGTTTAATGTACCAATGTTCTGCTAAAGGTCTACAGACATGACATTTCAGCCTCATCTTACACGACTACCTTCCCTTTTCCTCATAGCATTTAGGCTTCATTCAAACtccaaaaattaaacaataagaaaataacaaagatgAAAAAGAAGTGCTTTGTTCCAGGTAAAACTAAGAGTAAAAGAAGAACAATTACATTGTTTTCCCAGGGTGCTGCCTGCAGCCTCTTAACTTACACTTTAACAATGAAGTACCACTTGTTGGattccaaaaaaacaacacatacaAATTCAAAGAGCTCAATTCAAACTCGTACAAAATCACAccattacaaatataaaaccGGTGACATTTTTTTTCGAAGATCTCTTTTCAGTAAGAAATCAATCTTGACACGCTGCGGATTgtcaatgaataaataaattcacaatTAGAAACAGAAGTAATAGGTATTTTTGCAAatcatgcaatgcaaaattaTTAAGTACTTTTGATCAGCTGATTGTCTGATTGTATGTTCTAACATACATATGCTTTCTTACAAAAACTGGATTATGAAATATAACATCCAAGACTTCATATCTAAAAATTCCTAATTTTTTACCCTGATCAAGAATATCTGAAATAACTGTGCTACTAACTTTCCCTCACAACAGAACAAAGACACTGTGACTTCTGAGATGCACGGAAACACAGCTGAGATGCAAAGTCACTGGAAATCATTTCATAGTAAcatcgtgttttttttttgcatagcgTTCACCTGACTTCACCAGTACACAGTTAATGGTCCAGTTTAAGAATTCAAGGCTGATCATGAATCTTAGAtgaatgtatgaatgaatggatgtatgtatgtatgtatgtatgtgcatgGAGGCTGTAGGACGAGGCTATAAAGctgaaatatatgtacatattgcGCTCGTGAGGGCGTGATTGATGTAAACTGCAGAGGAACATTAAGGGTAGTGTTAACAGGCAATCTCCATGAGAACACggaaaaactgagaaaactgaGGCGAGTGCTGCATGCGATTGGTCTTGCTTGTAGTCACTtaacaacattaaataaaaacagtcatttaaaataaattaaaactcaataaacatTGGATAACAAAGTCAGAAAAGAACTGAGAGTGGAATATGCCACGTACTGTGTGTGGAAATAAATGATTCGCTCAGTTCAAGACTTGGGTCTTCGTATTTTTTTGTAAGTGGCACTCATTAATTAACCTGACTGGCCCTCTATAAATCATCTGTAGAGGAGCACTAAGccacaaaaatacagttaatcT
>TU112323
TTTtaacaaaatgcagtttttattcTCCAAGACCAATGATACAATCATTAGAAATGTTTGAAAATCTCACAATTTTTACAGGATTGTTAGTCCCACTGAAGCTGGTGAAAAGTCCACAAAGAAAAGAGTCGAATTAATGAAACGACATGAACGAGACAGAAAACCAGGCACGGTGACTGACCAACCCGACATAAAGATCTGTACAGTATGTGCATGAAAAAGCAATGGTAAACAACATCAACGGAAACAGAAAATGTTCTGCAGCAGTTTACAAACGAAACATTTATGAAGATTATTCAAAAACATGGATATTCTTTCATCAATAAAAGTGTGGAACGGGTTTTTTTCCAGAATATTACATACAAAACACTGCATCTGAGAGACCTTTCTAACCTGATTTAGAGCTAGAGTGCAACAACTCGAACACGCTGCTGAACTCTCTGAAGAACTGCCAAAAACATCTATATGTTCTGATGGAAAGGTGTTaatctgctaatgctaatgctttagACATAAGATTATTATTATGCGTTATGCATGTCCTCTGTGAGATCATCTACCCACCTCCCAGCCTGTCTGTAGGCCCAACTTTACATCCACAACATATCATCGTGTTTAATGAGTTACTGATGAAACTCAAGTACAGTAACCCCTGAAGAACTATGAACCTCAACCAACCAGACGTCTCCGTTTGGGCTGGATCTCACccgcaaaaatgaaaaattgtggAGTTAAATTCGGCAGCGGATTTGCTGACCACAGCTCCTGATGAACATTACTCATGGGGCATTTCTAAAGCTCAGAATTCCTCAGCCACACATTCGTCAACTGCTTGACGCAAACCCTCGACCGTCTGTAATCGCTCGCACGACTTTGGCTCGGAGATGCaaccaaaaacatttggttatTTAAAGACATACCAAGCTGAACTTTTGGTAATATTAAACACTGCCATAAAGCAGTTATTAGAAATATGTAATAACATGGTAACAGTGCACAGCTCTTTAAGTCGCAGTACTGTAAACATGTTCGCTCTTCTCACAGCCGAAAAAAAGGACAAGATTTTATAAAAGGAAGGAATCAAACTAAGGGGCGGATGCTGAAAAGCCATGTGATCACTCTGAGGTCTGTCTTTAATGAGGCTATGGTCAGACTGACAGTCCAAATCCAGTTTTAGACGTATTTAAATTGTATCCATGGTGATTTTTGATGGACTGacagaaaccacatgaaataTGATTTTTGCTAATCGAATCCAAACCTCATTTAGAGGTGGTTTGAAACTCGATTACAGTCAGATTTGTACAGATGCGTCTCAGTCTGAACACTCTggttaagataaaaaaaaaccccgAGCTCATTCACCTCTAATCAGAGAAGATTAGAGATCatcagaaacacagaggagcaaTGTGGAAATAACTAGAATCAGCATCGTGCAGATACACTTACTACAGTATCTCCAGACACACAAAACTAATCTGATCACCTGCAAATACCAGTGCAGACAGTCATCCcatcagatctgatttgaaaaacaattaaatccGATTCGCCTgtagtctgaacacagcctcAGTCTAACCCTCAGCCAGTCCACATTATGCTCTAATTAAAATACCCGACTATtatcaacattattattattattgagatTATTATTGTGCCCTACTGTAACATAAAACCACacccacatccacacacacacacacacagagagagctgGATATcaatattcagtatttttataAAACTGACCAAACTGTTTGAATAATACTGAATAACACAGAATTCCATGTCATTCAATACCAATTTCTAATAGTCAGTAGAAGTCTTTATCAGCATCAGAGAGCAAGTACACTTCCTGCtccaaaatctaaaaaattCAGAGCGGTCCGCAAGTTTTATCTGAGATCATACATATAATTAGCATCTAATTAACACAGAATGATATTTTGATACATAACTTATACAAAGATCAGCATTAACTTAATATTGTGTATGTCCCTCCTGTGACACCATAACAGATCTGACCATTTGAGGCAAGGACTGCACAAGACCTCTAAAATGATGAgttgctttgattttaccaaatttaaaacttctggaatataatcaagctgaactgcttcaggagtggcataaagttatccaaaagcagtgtgtaagactggtggagaagaacatgccaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112322 True 4174 lncRNA 0.36 2 25127960 25132154
TU112323 False 2192 lncRNA 0.38 3 25127960 25187909

Neighbor

gene id symbol gene type direction distance location
clic5 clic5,LOC105909474,LOC103355727 coding upstream 18210 25098039 ~ 25109750 (+)
enpp4 enpp4 coding upstream 32817 25087603 ~ 25095143 (+)
xkr6 xkr6,xkr6a,LOC108269486,LOC107693112 coding upstream 56855 25045713 ~ 25071105 (+)
LOC103039108 NA coding upstream 119183 24998335 ~ 25008777 (+)
gckr gckr coding upstream 130086 24981376 ~ 24997874 (+)
mcm8 mcm8,LOC107594086,LOC107678783 coding downstream 479790 25667699 ~ 25683838 (+)
crls1 crls1,LOC107663140,LOC107738554,LOC107678734,LOC103476593 coding downstream 496896 25684805 ~ 25690894 (+)
gdf3 gdf3 coding downstream 527149 25715058 ~ 25717446 (+)
LOC103021856 bmp2,LOC108414145,LOC108270435 coding downstream 530565 25718474 ~ 25724909 (+)
LOC103033987 plcb1,LOC103033987,LOC108423552,LOC107663155,LOC107678738 coding downstream 647231 25835140 ~ 25916844 (+)
G83307 NA non-coding upstream 195421 24931919 ~ 24932539 (+)
G83295 NA non-coding upstream 234321 24893243 ~ 24893639 (+)
G83180 NA non-coding upstream 287832 24838530 ~ 24840128 (+)
G83167 NA non-coding upstream 355167 24771882 ~ 24772793 (+)
G83123 NA non-coding upstream 485305 24642392 ~ 24642655 (+)
G83438 cdc5l,LOC107594083,LOC107552094 non-coding downstream 173818 25361727 ~ 25367281 (+)
G83440 cdc5l,LOC106599718 non-coding downstream 182342 25370251 ~ 25387590 (+)
G83441 NA non-coding downstream 190662 25378571 ~ 25379291 (+)
G83446 NA non-coding downstream 275991 25463900 ~ 25464253 (+)
G83449 NA non-coding downstream 307249 25495158 ~ 25495660 (+)
c9h8orf74 NA other upstream 93839 25029997 ~ 25034121 (+)
LOC111193228 NA other upstream 191774 24934164 ~ 24936186 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other upstream 203145 24895894 ~ 24924815 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 985728 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 1153985 23909682 ~ 23973975 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 731648 25919557 ~ 25975283 (+)
G83602 NA other downstream 1047589 26235498 ~ 26253602 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other downstream 1087092 26275001 ~ 26305383 (+)
LOC103031022 LOC103031022,LOC108423548 other downstream 1133276 26321185 ~ 26327338 (+)
spata7 NA other downstream 1204981 26392890 ~ 26399267 (+)

Expression


Co-expression Network