LOC103040243 (tdh,LOC103040243,LOC108441731,LOC107561940,LOC107723287,LOC107589050,LOC107701506,LOC107746115,LOC105018021,LOC104922441)


Basic Information

Item Value
gene id LOC103040243
gene name tdh,LOC103040243,LOC108441731,LOC107561940,LOC107723287,LOC107589050,LOC107701506,LOC107746115,LOC105018021,LOC104922441
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 25034004 ~ 25041054 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU112362
TCGAGCACGCTGGAGGAGACAGGCGTGAATCTGATGCAATAACGGCACTTGATGGAGGAACGGGGTTAAACTATATTCAGCTTCATTCAGCGATATCCGCCTGTAACCTGATTCCCCCAAATCTCTGATAGTTTCCTAGACTAAAGGTGAATTTTACACAGTCCAACAGTTTCGCCTTTAACCCTGAAGAAAATTCACCTGTGTGGAAACAGCAATAAACGAGTGGGAAATGCCGGTTGTCAGAACTGTGTCTAAGGTGGTCCAGCAGGTTCTCCTGGCTCCAGCCTGCAGCTGTGGACCCCTCTCCCTGTCTGTACGGAGCATCAGTTTCTCACCACGTCAAGTAACGTCTGATGCCAGCTTTCACTCTGTGTCCTTCTCAGAGACTGACCACCCCAGAGTTCTCATCACAGGGGGTCTGGGGCAGCTGGGTGTGGGGCTTGCCAAACTGCTTAGGAAGCGATTTGGAAAAAACAACGTAATCCTGTCTGACATCAGAAAGCCCCCAGATCATGTTTTCCGCAGCGGCA
>XM_007252035.3
CTATCCAATGGGGGAAGAGCAGAGACCGGCGAGTCCTCGAGCACGCTGGAGGAGACAGGCGTGAATCTGATGCAATAACGGCACTTGATGGAGGAACGGGGTTAAACTATATTCAGCTTCATTCAGCGATATCCGCCTGTAACCTGATTCCCCCAAATCTCTGATAGTTTCCTAGACTAAAGGTGAATTTTACACAGTCCAACAGTTTCGCCTTTAACCCTGAAGAAAATTCACCTGTGTGGAAACAGCAATAAACGAGTGGGAAATGCCGGTTGTCAGAACTGTGTCTAAGGTGGTCCAGCAGGTTCTCCTGGCTCCAGCCTGCAGCTGTGGACCCCTCTCCCTGTCTGTACGGAGCATCAGTTTCTCACCACGTCAAGTAACGTCTGATGCCAGCTTTCACTCTGTGTCCTTCTCAGAGACTGACCACCCCAGAGTTCTCATCACAGGGGGTCTGGGGCAGCTGGGTGTGGGGCTTGCCAAACTGCTTAGGAAGCGATTTGGAAAAAACAACGTAATCCTGTCTGACATCAGAAAGCCCCCAGATCATGTTTTCCGCAGCGGTCCATTTATCTATTCTGACATACTGGACTACAAGAATTTACGAGAAATTGTTGTAAACAATCGTATCACCTGGCTGGTGCACTACAGTGCCCTTTTGAGTGCTGTTGGGGAGGCAAATGTGACCCTTGCCCGCAATGTCAACATCACAGGATTGCACAATATCCTTGACATTTCTGCAGAGCATGGGCTTCGGCTCTTTGTTCCTAGCACAATAGGAGCATTTGGACCAACATCCCCTCGTAACCCCACTCCAGACCTGTGCATCCAGAGGCCAAGGACCATTTATGGGGTCTCCAAGGTCCATGCTGAGCTAATGGGAGAATATTACCACCACAGAAATGGCCTCGACTTCCGCTGTCTCAGATATCCAGGCATCATCTCTGCAGACTCTCAGCCTGGCGGAGGAACAACAGACTATGCTGTCCAGATATTTCACGATGCTGTAAAAACAGGCAAGTTTGTGTGCAACCTGAAGCCTGACACACGCCTTCCCATGATGTTCATTGACGACTGCCTGAGAgccaccctagaagtgatggaGGCTCCCGCTGAGGCCCTCAGCATGCGCACCTACAATATCAATGCCATGAGCTTTACTCCTGAGGAGCTGGCCCGGGAGGTGCAGAAACAGCTGCCTGATCTGCAGGTCACTTATGAAATTGATCCAGTAAGACAGGCAATCGCTGACAGTTGGCCCATGAGCTTTGAAGACAGCAATGCCAGAAAGGACTGGGGCTGGAAACACGAATATGACTTACCAGAGCTTATCCAGACAATGCTCAACTTCATTGGCTCTGATTCAAGAATTGCACATGCTAACTAAACACCATAACTTATAACTGTGCATAGTTATTACAATTCTATGCATACTTAGGTATGCTAGACATTAAGGAATGTAGCTTTTTTGGTAGTTTACGAGCTGGGTCCAACCAAAGAAAGAGTATAGAGCTGCAAAATTCCAGGAGAACAAAGGCAGTGAtcaaatctttatttttctaGTTACCACACAAGCACTTGATCACTGTACCTAAGCTTGGTTCAGGTGAAGTCAACTCTTTGGAATGTAGATTTCCAGGAAGGTGtcttaaatgttaattttttttctagaaatgATAAGATGATAAAGATGAGTCATCTATTTATACAAAACAAGTTTTCTATTGTATTTtctatttaacatatttattggTAGGCCAATTCtgtgaatttgttttattagtcAGTATTTATTGAAAACACTTGAATTTAGCATCTTGAACTCCAATTGTCAAATGATATTCAACACATGTCTATGTGTTTAGTGAAAAACTgagaaattatgttttattatttatcaattatttaaaattaaattaaatggccACCTTTTGTAGAGATACTCATTCCTAGTGTGAATGATGGGGTTAGCAGTACATTATAGCAGCTGCTACAATAGACCTACAACTACAGCActctatacatttattttaagttaatcTCTCAAAATATCCTTTAATACttgatattttactttacttgacAATGGCATACACGTCATCTGTTTACagtcatttttttatctatattgaaatattttatcTTCATATACTGTAAAGACAGTGTAGTTTTAATGCACTATTGTTAAATTGACATCATTTTTATGAGCAGTTATTGCTATTCTCACTACTGTAATCACACTAGTGTAACTTTTTACTGCTACATATTTCTGATATTTATATACTTGTAGAAAAGAAATCaactgttgtttattttaaccCAGATTATATTCTAGATTTATGGTGCTGTAGTGAAAAGGCTATATTTGAGTCTTTCAGCTTTATTAAGAGCACTTTCCAACAGTTTTGTACAGTTTATCCCAGTTTGCTAAACAGacaaatgtgtttatattttagtcATTAAAGATTGTTTGCCA
>XM_022673030.1
GGGCTGATTTTCACTTTAATAGCcaacagctagctagctctagctaggttagctaacccgTCACATTGATCTGTCGTAATTAAAGTAGGTCATGGAGCTCCTTTGGTGAGGTTACCTGTCGAAAAAGCCGTATTtgattatgttttaaaaataatacgTTAGTTTGAGTTTCAGACCTGATAAGACCTGGAATCATTCAGTTTAGCCTTAGCTAAAAGAGCCAGAAGAGCCTGTCTGTTAGTGACACGGAACGGTAACCAGGTAACTAACGTTAGCTGGGTTGCTAGCTAAACATCTCACTCCTAAAGCCTCGCCTGCAAGTGGGAAATGCCGGTTGTCAGAACTGTGTCTAAGGTGGTCCAGCAGGTTCTCCTGGCTCCAGCCTGCAGCTGTGGACCCCTCTCCCTGTCTGTACGGAGCATCAGTTTCTCACCACGTCAAGTAACGTCTGATGCCAGCTTTCACTCTGTGTCCTTCTCAGAGACTGACCACCCCAGAGTTCTCATCACAGGGGGTCTGGGGCAGCTGGGTGTGGGGCTTGCCAAACTGCTTAGGAAGCGATTTGGAAAAAACAACGTAATCCTGTCTGACATCAGAAAGCCCCCAGATCATGTTTTCCGCAGCGGTCCATTTATCTATTCTGACATACTGGACTACAAGAATTTACGAGAAATTGTTGTAAACAATCGTATCACCTGGCTGGTGCACTACAGTGCCCTTTTGAGTGCTGTTGGGGAGGCAAATGTGACCCTTGCCCGCAATGTCAACATCACAGGATTGCACAATATCCTTGACATTTCTGCAGAGCATGGGCTTCGGCTCTTTGTTCCTAGCACAATAGGAGCATTTGGACCAACATCCCCTCGTAACCCCACTCCAGACCTGTGCATCCAGAGGCCAAGGACCATTTATGGGGTCTCCAAGGTCCATGCTGAGCTAATGGGAGAATATTACCACCACAGAAATGGCCTCGACTTCCGCTGTCTCAGATATCCAGGCATCATCTCTGCAGACTCTCAGCCTGGCGGAGGAACAACAGACTATGCTGTCCAGATATTTCACGATGCTGTAAAAACAGGCAAGTTTGTGTGCAACCTGAAGCCTGACACACGCCTTCCCATGATGTTCATTGACGACTGCCTGAGAgccaccctagaagtgatggaGGCTCCCGCTGAGGCCCTCAGCATGCGCACCTACAATATCAATGCCATGAGCTTTACTCCTGAGGAGCTGGCCCGGGAGGTGCAGAAACAGCTGCCTGATCTGCAGGTCACTTATGAAATTGATCCAGTAAGACAGGCAATCGCTGACAGTTGGCCCATGAGCTTTGAAGACAGCAATGCCAGAAAGGACTGGGGCTGGAAACACGAATATGACTTACCAGAGCTTATCCAGACAATGCTCAACTTCATTGGCTCTGATTCAAGAATTGCACATGCTAACTAAACACCATAACTTATAACTGTGCATAGTTATTACAATTCTATGCATACTTAGGTATGCTAGACATTAAGGAATGTAGCTTTTTTGGTAGTTTACGAGCTGGGTCCAACCAAAGAAAGAGTATAGAGCTGCAAAATTCCAGGAGAACAAAGGCAGTGAtcaaatctttatttttctaGTTACCACACAAGCACTTGATCACTGTACCTAAGCTTGGTTCAGGTGAAGTCAACTCTTTGGAATGTAGATTTCCAGGAAGGTGtcttaaatgttaattttttttctagaaatgATAAGATGATAAAGATGAGTCATCTATTTATACAAAACAAGTTTTCTATTGTATTTtctatttaacatatttattggTAGGCCAATTCtgtgaatttgttttattagtcAGTATTTATTGAAAACACTTGAATTTAGCATCTTGAACTCCAATTGTCAAATGATATTCAACACATGTCTATGTGTTTAGTGAAAAACTgagaaattatgttttattatttatcaattatttaaaattaaattaaatggccACCTTTTGTAGAGATACTCATTCCTAGTGTGAATGATGGGGTTAGCAGTACATTATAGCAGCTGCTACAATAGACCTACAACTACAGCActctatacatttattttaagttaatcTCTCAAAATATCCTTTAATACttgatattttactttacttgacAATGGCATACACGTCATCTGTTTACagtcatttttttatctatattgaaatattttatcTTCATATACTGTAAAGACAGTGTAGTTTTAATGCACTATTGTTAAATTGACATCATTTTTATGAGCAGTTATTGCTATTCTCACTACTGTAATCACACTAGTGTAACTTTTTACTGCTACATATTTCTGATATTTATATACTTGTAGAAAAGAAATCaactgttgtttattttaaccCAGATTATATTCTAGATTTATGGTGCTGTAGTGAAAAGGCTATATTTGAGTCTTTCAGCTTTATTAAGAGCACTTTCCAACAGTTTTGTACAGTTTATCCCAGTTTGCTAAACAGacaaatgtgtttatattttagtcATTAAAGATTGTTTGCCA

Function

symbol description
tdh Predicted to enable L-threonine 3-dehydrogenase activity. Predicted to be involved in threonine catabolic process. Is expressed in several structures, including immature eye; mucus secreting cell; nervous system; neural rod; and pancreas. Orthologous to human TDH (L-threonine dehydrogenase (pseudogene)).

NR:

description
L-threonine 3-dehydrogenase, mitochondrial-like

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050662 obsolete coenzyme binding molecular_function
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity molecular_function

KEGG:

id description
K15789 TDH; threonine 3-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
TU112362 False 530 TUCP 0.50 4 25037235 25041018
XM_007252035.3 False 2476 mRNA 0.41 9 25034004 25041054
XM_022673030.1 True 2538 mRNA 0.41 9 25034004 25040742

Neighbor

gene id symbol gene type direction distance location
LOC103039713 NA coding downstream 3291 25009168 ~ 25030713 (-)
LOC103038793 LOC103038793,LOC108441718,LOC108269503 coding downstream 55442 24969259 ~ 24978562 (-)
LOC103038485 LOC108441717 coding downstream 67072 24960734 ~ 24966932 (-)
LOC107197685 LOC108441730,LOC108270472,LOC107653800,LOC107717246,LOC107594140,LOC107552087,LOC107734306 coding downstream 79038 24940038 ~ 24954966 (-)
LOC103037621 LOC103037621,LOC108428732,LOC108270140,LOC107734000,LOC107717228,LOC107692934,LOC107552030,LOC107594120 coding downstream 142810 24882905 ~ 24891194 (-)
LOC103041368 NA coding upstream 32085 25073139 ~ 25086487 (-)
runx2 runx2,runx2a,LOC102312376,LOC107378134 coding upstream 91766 25132820 ~ 25171328 (-)
cdc5l cdc5l,LOC107594083 coding upstream 320664 25361718 ~ 25387594 (-)
LOC103042905 klhl29,LOC108441727,LOC108269491,LOC107733414,LOC107678777,LOC105909435 coding upstream 467834 25508888 ~ 25659843 (-)
LOC103047496 NA coding upstream 621097 25662151 ~ 25665271 (-)
G83384 NA non-coding downstream 25247 25007613 ~ 25008757 (-)
G83383 NA non-coding downstream 27786 25005021 ~ 25006218 (-)
G83382 NA non-coding downstream 29912 25003809 ~ 25004092 (-)
G83380 NA non-coding downstream 31846 25001014 ~ 25002158 (-)
G83378 NA non-coding downstream 34216 24999321 ~ 24999788 (-)
G83391 NA non-coding upstream 25477 25066531 ~ 25125296 (-)
G83403 NA non-coding upstream 86909 25127963 ~ 25129970 (-)
G83412 NA non-coding upstream 131397 25172451 ~ 25245952 (-)
G83428 NA non-coding upstream 199481 25240535 ~ 25324703 (-)
G83435 NA non-coding upstream 275933 25316987 ~ 25358168 (-)
LOC103026430 LOC108428707,LOC108269919,LOC107102228,LOC103379330,LOC101162185 other downstream 398123 24630879 ~ 24635881 (-)
cunh6orf183 zbtb24 other downstream 417388 24588941 ~ 24616616 (-)
G82991 LOC108428614,LOC108269476,LOC107734364,LOC107693224,LOC107589682 other downstream 1016348 24012634 ~ 24017656 (-)
kiaa0586 NA other downstream 1159603 23713376 ~ 23874401 (-)
sptssa sptssa other downstream 1844915 23110883 ~ 23189089 (-)
G83612 NA other upstream 951445 25992499 ~ 26003685 (-)
cga cga other upstream 1393418 26434472 ~ 26470163 (-)
LOC103043566 LOC108423527,LOC108270165,LOC100330554,LOC107677688,LOC103153288,LOC103458816,LOC106945627,LOC103355980,LOC102293757 other upstream 2789574 27830628 ~ 27848444 (-)
G84215 NA other upstream 3303535 28344589 ~ 28356545 (-)
rps6kl1 rps6kl1 other upstream 3634544 28675598 ~ 28694982 (-)

Expression


Co-expression Network