G83438 (cdc5l,LOC107594083,LOC107552094)


Basic Information

Item Value
gene id G83438
gene name cdc5l,LOC107594083,LOC107552094
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 25361727 ~ 25367281 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU112432
aaaaaaaaacatgtttattttataatttgaatGAAAAAAGCAACACTGAGCGATCTCAGAACTGAAGGGTTACAGTTGAAGAACTAGATTGATCACATCCAACAAGGATACACAGTTCCCTCAACATCAACGTACCAAATGAAAAGGTACAAGACTCTTGTGTGCAGTCTCCAAAATGGCCTGAATCTGAAAACAAAGCAGAGCAAACATACTGCCAGACAgacaatatttacaacatacatcatgttgattttacaaaatgaaaaactgatgattttaaaaacaaagtggGGGCTCCATGTGGGTGACTGGTCCATGGGATCTGAAGTGCACAGAGCCTGAACTTTAACTCCACACTCACGAGAGAAGCTTTGAGAAGCAGCGACGGAATCTTTGTTGCTTGCTGAAGGACATTAATATGGTACACACTGAAATCCATGCTGTTATACAAGCTGGAAAAATTAACTCCATAGATGGGTCTTATATTACAACCAGTGTACATTCAGCCACGATGTTGAGATAGAGTTACACATTCTTTCCCCAAAGTCACATTCAGTACTTTTCTGAACCCAACGTTTCTTTCTCAAGGAGGAGGTCAGCGAACCTCTGCTgaagctctttctctctttcctgctGCCTCTGCACATCCTCTCTCAGAGCCTCCTGTCTGCGTGGGATGGCTGTGTCCTCCTGCTTCTTCAGCTCCTGGAATGTGTGGAGCTCCATGTGGGCCTGCTCCACCTGGTCCCACAGGTCACTGAGCTGCTTCATCAACCCCATGGCGCGAGACTGGTATCCACCCAGCAGGATCTTCATCTTCTTTTCCATCTTAGCTGCACGTTTGGCCTCTGTTGTCATGTGCCCCCTGTTAATCTCCAGTTTCTTCTCCAGGGATTCGATCCTGTCCTTCTTGCTCGCCAAGTTGGCTCTTGTATAGCGGTTCTGACCAGGCAGGTACAGCACCTGGCTGTAGCATTCCTCCCACACCTGGTTATAGGCCTCGTTGGAAAGATCACCATGGCCCATTCCATGCTTCACCACCTCCATTTCTTGCTTAAGCAGGTCCTTGGCctttttaacGTCTTCCTCCCCAACCTTTTCGTAGGGCGTTTTCTCCAGGAAGGCAATGTGCTCAGCGTTGTTGGAGCTGGATCCCACTCCCTTAACTTTTTTGGCCAGTGCCTCTGTATAAGGGTGATGCAGGCTGTCAAAGTGAATCATAGTGATCATTTCCTTCttaatgagctcctctgcctgctGAAGGTCTGTGAGAGGAGGTTCCACATTCTGAGGCCTCAGAATGGTCTCG
>TU112433
aaaaaaaaacatgtttattttataatttgaatGAAAAAAGCAACACTGAGCGATCTCAGAACTGAAGGGTTACAGTTGAAGAACTAGATTGATCACATCCAACAAGGATACACAGTTCCCTCAACATCAACGTACCAAATGAAAAGGTACAAGACTCTTGTGTGCAGTCTCCAAAATGGCCTGAATCTGAAAACAAAGCAGAGCAAACATACTGCCAGACAgacaatatttacaacatacatcatgttgattttacaaaatgaaaaactgatgattttaaaaacaaagtggGGGCTCCATGTGGGTGACTGGTCCATGGGATCTGAAGTGCACAGAGCCTGAACTTTAACTCCACACTCACGAGAGAAGCTTTGAGAAGCAGCGACGGAATCTTTGTTGCTTGCTGAAGGACATTAATATGGTACACACTGAAATCCATGCTGTTATACAAGCTGGAAAAATTAACTCCATAGATGGGTCTTATATTACAACCAGTGTACATTCAGCCACGATGTTGAGATAGAGTTACACATTCTTTCCCCAAAGTCACATTCAGTACTTTTCTGAACCCAACGTTTCTTTCTCAAGGAGGAGGTCAGCGAACCTCTGCTgaagctctttctctctttcctgctGCCTCTGCACATCCTCTCTCAGAGCCTCCTGTCTGCGTGGGATGGCTGTGTCCTCCTGCTTCTTCAGCTCCTGGAATGTGTGGAGCTCCATGTGGGCCTGCTCCACCTGGTCCCACAGGTCACTGAGCTGCTTCATCAACCCCATGGCGCGAGACTGGTATCCACCCAGCAGGATCTTCATCTTCTTTTCCATCTTAGCTGCACGTTTGGCCTCTGTTGTCATGTGCCCCCTGTTAATCT

Function

symbol description
cdc5l Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within RNA splicing; cell division; and mRNA processing. Predicted to be part of Prp19 complex and spliceosomal complex. Human ortholog(s) of this gene implicated in osteosarcoma. Orthologous to human CDC5L (cell division cycle 5 like).

NR:

description
PREDICTED: cell division cycle 5-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112432 True 1309 lncRNA 0.46 4 25361727 25367281
TU112433 False 875 lncRNA 0.44 2 25361727 25363334

Neighbor

gene id symbol gene type direction distance location
clic5 clic5,LOC105909474,LOC103355727 coding upstream 251977 25098039 ~ 25109750 (+)
enpp4 enpp4 coding upstream 266584 25087603 ~ 25095143 (+)
xkr6 xkr6,xkr6a,LOC108269486,LOC107693112 coding upstream 290622 25045713 ~ 25071105 (+)
LOC103039108 NA coding upstream 352950 24998335 ~ 25008777 (+)
gckr gckr coding upstream 363853 24981376 ~ 24997874 (+)
mcm8 mcm8,LOC107594086,LOC107678783 coding downstream 300418 25667699 ~ 25683838 (+)
crls1 crls1,LOC107663140,LOC107738554,LOC107678734,LOC103476593 coding downstream 317524 25684805 ~ 25690894 (+)
gdf3 gdf3 coding downstream 347777 25715058 ~ 25717446 (+)
LOC103021856 bmp2,LOC108414145,LOC108270435 coding downstream 351193 25718474 ~ 25724909 (+)
LOC103033987 plcb1,LOC103033987,LOC108423552,LOC107663155,LOC107678738 coding downstream 467859 25835140 ~ 25916844 (+)
G83354 NA non-coding upstream 173818 25127960 ~ 25187909 (+)
G83307 NA non-coding upstream 429188 24931919 ~ 24932539 (+)
G83295 NA non-coding upstream 468088 24893243 ~ 24893639 (+)
G83180 NA non-coding upstream 521599 24838530 ~ 24840128 (+)
G83167 NA non-coding upstream 588934 24771882 ~ 24772793 (+)
G83440 cdc5l,LOC106599718 non-coding downstream 2970 25370251 ~ 25387590 (+)
G83441 NA non-coding downstream 11290 25378571 ~ 25379291 (+)
G83446 NA non-coding downstream 96619 25463900 ~ 25464253 (+)
G83449 NA non-coding downstream 127877 25495158 ~ 25495660 (+)
G83456 NA non-coding downstream 150309 25517590 ~ 25537270 (+)
supt3h supt3h other upstream 32245 25160918 ~ 25329482 (+)
c9h8orf74 NA other upstream 327606 25029997 ~ 25034121 (+)
LOC111193228 NA other upstream 425541 24934164 ~ 24936186 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other upstream 436912 24895894 ~ 24924815 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 1219495 24139389 ~ 24142232 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 552276 25919557 ~ 25975283 (+)
G83602 NA other downstream 868217 26235498 ~ 26253602 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other downstream 907720 26275001 ~ 26305383 (+)
LOC103031022 LOC103031022,LOC108423548 other downstream 953904 26321185 ~ 26327338 (+)
spata7 NA other downstream 1025609 26392890 ~ 26399267 (+)

Expression


Co-expression Network