c9h14orf132 (csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175)


Basic Information

Item Value
gene id c9h14orf132
gene name csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26275001 ~ 26305383 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU112689
TCTCCACACTCTGTGCCGCTTCTCTCTCGTGCGGTCCTCTCAGTAGCTTTCAGCTGGTTTAGTGATGGATCAGTAGCATCCTGAACTCCTCTCAAACCTCACGCAGCCCAATGAGCTGCTCTGGGAATACAGCCTGATACAAACACAGCTTTTACCTCCTCGCTGGATGAGATTAGTCACAATTCAACAAGATGGATCTTTCATTTATGGCAGCACAGATCCCGGTTATGACTGGAGCGTTTATGGACTCTTCGCCCAACGATGACTACAGCGCCGAGCACTCCCTCTTCAACTCGTCTGCCAGCGTGAACGCAGCCCCCATAGTCCCAGTGCAGACACAGCACGACGAGCAGCAGCACATGTCCAGCGATGCTATCTGGCTGTGGATCGCCATTGTTGCCACCATTGGGAATATTGTGGTTGTGGGAGTGGTTTACGCATTCACTTTCTGATCCCTCCATTCACAGAGGCTTCACTGCAGCCCAGCTCTAAAGGCTGAGGCTGTGCTGAATTATACATATACTGTCTACTGGCAGAGATATTGTTTATTCGGTTCTTAGCTAAACCAATCCCCGCAGATGAAACCTTCCCACCGACACCTCTATCTGGAAGCCTCCAAACCTCATGCATTAATGAGCAGTGTCCTTGTGTATAGAGGATGTTCAAAGGAATTAAATGGGCTTTACGGATTGGACCTACTTAAATGTTCCCCGGAGGTATGAGAAGCAATTAAGAGAAGTGCTGCTCAATTATTTGGATGAAGGGGCCGCAAATCTTTAAACATTAAAGCGAATCAGGTCACTGCTGTGGCATTATTTTAAGTCATGAACGTACTTGTTTTGCTGGCAAAGGATTTCAGAGGGTGTTTTGCTTGATATATAAAGTAGTTTGTAGATGAACTGACAGCTTAGTTTCATTATCATGGTAAAATAGTAAGAGAATGTGTCCTATTGCAATACaggtactgtaaaaaaaaaagtcttaaagtcttaaagaaacaacaaaatgtcttaaaatacagacataaatgtatataaagtgtACACAAAAAATTGTGCAATTTATACAAACATATTTGCTGCATTTTGTTCGTATATAATGATTGACAAGGAGCTCCCGTTCACTGGTGGTGCTGTTTTGCAAATACACAACCCAGCAAAGATGAATTGTGAAAAGAGTGCTGCTTTTCTCTGTTATGGAGCTTTTAAAGCAGAACTTAATGTAATGAAAACTCATAGAGAAACAATACAACCTTCACATTCTACTACTGCTATGTTTAGATTATTGTTTGGGTGAGGGGACATTTAATTTTAGGTTAAGATTTAGGTTTGAGGTGTGGATGCTTTGTAACATTCTTTGTTCAAATCATTTGTTTTCAGCTTTCCAAGGTTGCGTCAGAAAACGGTGTCAGAAAACATCAATATAttgaagtattgtgatatttcattttgcaatactgtagcaatttacaaaaacacagtatcagattttaagtttaattagtttagttgtaaagattggtgtcagatatgtttcattttgtgattgcagtgttgtactcttCCATTTCTTCAGATACCACTGTTCTGAttgaaaaagaaagtaaactGATCTTTAACTTAGATTTTATAAAGATGATAGTatgttttttacactataagagTTTTCCTGAAATTTGATAGCCCTTGAGGATTGACCTATATTTAGTACACATTGTACAAATCCTGATATCATCTTTTAGTTGCATATGTACTAATTCCTCTTTGAGACCGAGCTGAGCAAAAAACAAGGAGGATTTTGAATCAAAAGCCACAGTTGTGTGAACGACTGCCAAAACTTTTCGGAACAGATTGCATAAGCAAAGCACTATCTTGCACCAGGCACTTTCTCCCACCCTCTCTTCAAATTCAGAGCTGAAGCTCATTTCTGTCTGTGTTGTTCACCGAGAAATCTTGATGGCTTACGCATTCGGAGAATTGACTTCGATCAGTGTAGGTCCAGTTGTTACCAAGGCAATTAATCCTCCCTAATTACAGACTTTAAACGACTCTTCCCCAGCCAGAGGAAAGAAATCTACTGATGGAGACATCCTGGCTCTtaggtatcttattttttcagcCAGCTGTTCCCCTTATACTGGAagaggactgtgtgtgtggtggggggtaTACACTGGAGAAGCCATAAGCACACATTGTGTCCTCTTACAGATGTACTTAAGACTGGGTTGCCATGGAGAAGGCCAGAAGGGACACATTGAGATTTGTAGTAATGGTCCTGCACAGTGCCAGACCTCTAGTGGGTTCTTGGAGGGAAATCACTAGAGCTTTGCTTTGGAGTCAAATCGATGGCCAGGGCTCCACAAAAACAATGTGTATGAATATATTGGAAGTTTTGGTCATCTCTTAACAGAAATgtacaatgtttttaatgtccaataaattaaacaaacaatattTGGAATATTAAACTCACATtaattttgtacatgactgaaTTCAGTTCTGATTGATTAAGAGACTTGCTTCATTAGGTTGACACTTAAtctttcaacaagacaatggtCTGAAGAATCATACAGCCTAAAACAACACTGGAGTGGCCTACTTTGAGCCAAGTCTCTGAATGAATGTCCTTGAGTTCCCCAGTCAACATCcagacttaaaccccattgaccATCTGTGAAGGGACCCAAAAAATGCCAATTCACAGATGCTCACCATCCAAACTGACAGAGCTTCAGAGCATCTGCCTTGAAGAATTTGATGGACTGCCCAAATCCAGGTGTGCAATGCTTGTAGagacatatttgcatatttgcaagAAGATTTACAGCTTTAACTGATACTGCTTCATAAGAGG
>XM_015607884.2
TTCTCTCTCGTGCGGTCCTCTCAGTAGCTTTCAGCTGGTTTAGTGATGGATCAGTAGCATCCTGAACTCCTCTCAAACCTCACGCAGCCCAATGAGCTGCTCTGGGAATACAGCCTGATACAAACACAGCTTTTACCTCCTCGCTGGATGAGATTAGTCACAATTCAACAAGATGGATCTTTCATTTATGGCAGCACAGATCCCGGTTATGACTGGAGCGTTTATGGACTCTTCGCCCAACGATGACTACAGCGCCGAGCACTCCCTCTTCAACTCGTCTGCCAGCGTGAACGCAGCCCCCATAGTCCCAGTGCAGACACAGCACGACGAGCAGCAGCACATGTCCAGCGATGCTATCTGGCTGTGGATCGCCATTGTTGCCACCATTGGGAATATTGTGGTTGTGGGAGTGGTTTACGCATTCACTTTCTGATCCCTCCATTCACAGAGGCTTCACTGCAGCCCAGCTCTAAAGGCTGAGGCTGTGCTGAATTATACATATACTGTCTACTGGCAGAGATATTGTTTATTCGGTTCTTAGCTAAACCAATCCCCGCAGATGAAACCTTCCCACCGACACCTCTATCTGGAAGCCTCCAAACCTCATGCATTAATGAGCAGTGTCCTTGTGTATAGAGGATGTTCAAAGGAATTAAATGGGCTTTACGGATTGGACCTACTTAAATGTTCCCCGGAGGTATGAGAAGCAATTAAGAGAAGTGCTGCTCAATTATTTGGATGAAGGGGCCGCAAATCTTTAAACATTAAAGCGAATCAGGTCACTGCTGTGGCATTATTTTAAGTCATGAACGTACTTGTTTTGCTGGCAAAGGATTTCAGAGGGTGTTTTGCTTGATATATAAAGTAGTTTGTAGATGAACTGACAGCTTAGTTTCATTATCATGGTAAAATAGTAAGAGAATGTGTCCTATTGCAATACaggtactgtaaaaaaaaaagtcttaaagtcttaaagaaacaacaaaatgtcttaaaatacagacataaatgtatataaagtgtACACAAAAAATTGTGCAATTTATACAAACATATTTGCTGCATTTTGTTCGTATATAATGATTGACAAGGAGCTCCCGTTCACTGGTGGTGCTGTTTTGCAAATACACAACCCAGCAAAGATGAATTGTGAAAAGAGTGCTGCTTTTCTCTGTTATGGAGCTTTTAAAGCAGAACTTAATGTAATGAAAACTCATAGAGAAACAATACAACCTTCACATTCTACTACTGCTATGTTTAGATTATTGTTTGGGTGAGGGGACATTTAATTTTAGGTTAAGATTTAGGTTTGAGGTGTGGATGCTTTGTAACATTCTTTGTTCAAATCATTTGTTTTCAGCTTTCCAAGGTTGCGTCAGAAAACGGTGTCAGAAAACATCAATATAttgaagtattgtgatatttcattttgcaatactgtagcaatttacaaaaacacagtatcagattttaagtttaattagtttagttgtaaagattggtgtcagatatgtttcattttgtgattgcagtgttgtactcttCCATTTCTTCAGATACCACTGTTCTGAttgaaaaagaaagtaaactGATCTTTAACTTAGATTTTATAAAGATGATAGTatgttttttacactataagagTTTTCCTGAAATTTGATAGCCCTTGAGGATTGACCTATATTTAGTACACATTGTACAAATCCTGATATCATCTTTTAGTTGCATATGTACTAATTCCTCTTTGAGACCGAGCTGAGCAAAAAACAAGGAGGATTTTGAATCAAAAGCCACAGTTGTGTGAACGACTGCCAAAACTTTTCGGAACAGATTGCATAAGCAAAGCACTATCTTGCACCAGGCACTTTCTCCCACCCTCTCTTCAAATTCAGAGCTGAAGCTCATTTCTGTCTGTGTTGTTCACCGAGAAATCTTGATGGCTTACGCATTCGGAGAATTGACTTCGATCAGTGTAGGTCCAGTTGTTACCAAGGCAATTAATCCTCCCTAATTACAGACTTTAAACGACTCTTCCCCAGCCAGAGGAAAGAAATCTACTGATGGAGACATCCTGGCTCTtaggtatcttattttttcagcCAGCTGTTCCCCTTATACTGGAagaggactgtgtgtgtggtggggggtaTACACTGGAGAAGCCATAAGCACACATTGTGTCCTCTTACAGATGTACTTAAGACTGGGTTGCCATGGAGAAGGCCAGAAGGGACACATTGAGATTTGTAGTAATGGTCCTGCACAGTGCCAGACCTCTAGTGGGTTCTTGGAGGGAAATCACTAGAGCTTTGCTTTGGAGTCAAATCGATGGCCAGGGCTCCACAAAAACAATGTGTATGAATATATTGGAAGTTTTGGTCATCTCTTAACAGAAATgtacaatgtttttaatgtccaataaattaaacaaacaatattTGGAATATTAAACTCACATtaattttgtacatgactgaaTTCAGTTCTGATTGATTAAGAGACTTGCTTCATTAGGTTGACACTTAAtctttcaacaagacaatggtCTGAAGAATCATACAGCCTAAAACAACACTGGAGTGGCCTACTTTGAGCCAAGTCTCTGAATGAATGTCCTTGAGTTCCCCAGTCAACATCcagacttaaaccccattgaccATCTGTGAAGGGACCCAAAAAATGCCAATTCACAGATGCTCACCATCCAAACTGACAGAGCTTCAGAGCATCTGCCTTGAAGAATTTGATGGACTGCCCAAATCCAGGTGTGCAATGCTTGTAGagacatatttgcatatttgcaagAAGATTTACAGCTTTAACTGATACTGCTTCATAAGAGGCTTCTACAaagtactaaataaaatattctgaaTACTTTTA

Function

NR:

description
PREDICTED: uncharacterized protein C14orf132-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112689 False 2862 lncRNA 0.40 2 26275001 26305343
XM_015607884.2 True 2883 mRNA 0.40 2 26275020 26305383

Neighbor

gene id symbol gene type direction distance location
LOC103033987 plcb1,LOC103033987,LOC108423552,LOC107663155,LOC107678738 coding upstream 358157 25835140 ~ 25916844 (+)
LOC103021856 bmp2,LOC108414145,LOC108270435 coding upstream 550092 25718474 ~ 25724909 (+)
gdf3 gdf3 coding upstream 557555 25715058 ~ 25717446 (+)
crls1 crls1,LOC107663140,LOC107738554,LOC107678734,LOC103476593 coding upstream 584107 25684805 ~ 25690894 (+)
mcm8 mcm8,LOC107594086,LOC107678783 coding upstream 591163 25667699 ~ 25683838 (+)
LOC103041814 LOC108423416 coding downstream 23418 26328801 ~ 26330956 (+)
LOC103041516 NA coding downstream 26544 26331927 ~ 26335823 (+)
LOC103041211 LOC103041211,LOC108423415 coding downstream 45748 26351131 ~ 26352435 (+)
LOC103030701 NA coding downstream 52396 26357779 ~ 26360746 (+)
ptpn21 ptpn21 coding downstream 95704 26401087 ~ 26420310 (+)
G83601 NA non-coding upstream 39826 26234916 ~ 26235175 (+)
LOC111193229 NA non-coding upstream 281989 25984681 ~ 25993012 (+)
G83522 hao1 non-coding upstream 472549 25798460 ~ 25802452 (+)
G83456 NA non-coding upstream 737731 25517590 ~ 25537270 (+)
G83449 NA non-coding upstream 779341 25495158 ~ 25495660 (+)
G83649 NA non-coding downstream 5326 26310709 ~ 26310948 (+)
G83661 NA non-coding downstream 33799 26339182 ~ 26339699 (+)
G83663 NA non-coding downstream 34448 26339831 ~ 26340272 (+)
G83672 NA non-coding downstream 117131 26422514 ~ 26423061 (+)
LOC111193231 NA non-coding downstream 201956 26507339 ~ 26565844 (+)
G83602 NA other upstream 21399 26235498 ~ 26253602 (+)
LOC103033015 LOC108423550,LOC108270308 other upstream 299718 25919557 ~ 25975283 (+)
supt3h supt3h other upstream 945519 25160918 ~ 25329482 (+)
c9h8orf74 NA other upstream 1240880 25029997 ~ 25034121 (+)
LOC111193228 NA other upstream 1338815 24934164 ~ 24936186 (+)
LOC103031022 LOC103031022,LOC108423548 other downstream 15802 26321185 ~ 26327338 (+)
spata7 NA other downstream 87507 26392890 ~ 26399267 (+)
fermt2 fermt2 other downstream 422440 26727823 ~ 26777488 (+)
fam98b NA other downstream 1510422 27815805 ~ 27822211 (+)
LOC103044189 LOC108423527,LOC107677688 other downstream 1518873 27824256 ~ 27831584 (+)

Expression


Co-expression Network