cga (cga)


Basic Information

Item Value
gene id cga
gene name cga
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26434472 ~ 26470163 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU112771
gttttatttAACTAACAGACATACAAAGGCAGGGGCGGGATGGTATAAAACCCTCAGAGGACTTTTTGAGGTTTTAGTTGAAGACACTCCTGGGGTGAAGAACAGCAGAGCTAGAATGATTCTGATCATTAAATACACGGGAGCAGCTGTCCTTTTGCTGTCAGTTCTAATTCAGATCGGACAGCTTTATCCACACAACGACATGTACTTTGGCTGTGAGGATTGCAAACTGAGGGAGAACACCGTCTTCTCCAGACCTGGCGCCCCTGTGTATCAGTGCATGGGATGCTGCTTTTCCAGGGCTTATCCGACTCCACTCCGCTCCAAACAGACAATGCTGGTCCCCAAGAACATCACATCGGAGGCCACATGCTGTGTTGCCAAAGAAATCCAAAGGGTTTTTGTCAACAACATAAAACCACATGTACTGAACCACACAGACTGCCACTGCAGCACTTGCTATTACCATAAATCCTAGATATCAGACCCTCAATTCCTCAATTACCTCCAGACAAGGATACTGATGCTTGCTTGGCTACTACTGTGAAGACGTCACTTGACTTTAAAGAAGTTATACTGCTGACAGTGTGCAAGCTTTGTATTGTGAGCTTTATAAggttttcatatgttaaaaatataaaatggttACACTCATCTTTTAATATAACTAGAACAAGATCTGTAGTTAGCAAAGCCTGCTAAAATATGGTACTTTTCCAGTGCAATCTCAATTCTAATATTTCCAAATTAATTTTCAGAATAAAGCCTCAGTTGCAACCCAaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
>XM_007257424.2
CGGGATGGTATAAAACCCTCAGAGGACTTTTTGAGGTTTTAGTTGAAGACACTCCTGGGGTGAAGAACAGCAGAGCTAGAATGATTCTGATCATTAAATACACGGGAGCAGCTGTCCTTTTGCTGTCAGTTCTAATTCAGATCGGACAGCTTTATCCACACAACGACATGTACTTTGGCTGTGAGGATTGCAAACTGAGGGAGAACACCGTCTTCTCCAGACCTGGCGCCCCTGTGTATCAGTGCATGGGATGCTGCTTTTCCAGGGCTTATCCGACTCCACTCCGCTCCAAACAGACAATGCTGGTCCCCAAGAACATCACATCGGAGGCCACATGCTGTGTTGCCAAAGAAATCCAAAGGGTTTTTGTCAACAACATAAAACCACATGTACTGAACCACACAGACTGCCACTGCAGCACTTGCTATTACCATAAATCCTAGATATCAGACCCTCAATTCCTCAATTACCTCCAGACAAGGATACTGATGCTTGCTTGGCTACTACTGTGAAGACGTCACTTGACTTTAAAGAAGTTATACTGCTGACAGTGTGCAAGCTTTGTATTGTGAGCTTTATAAggttttcatatgttaaaaatataaaatggttACACTCATCTTTTAATATAACTAGAACAAGATCTGTAGTTAGCAAAGCCTGCTAAAATATGGTACTTTTCCAGTGCAATCTCAATTCTAATATTTCCAAATTAATTTTCAGAATAAAGCCTCAGTTGCAACCCA

Function

symbol description
cga Predicted to enable follicle-stimulating hormone activity. Predicted to be involved in positive regulation of steroid biosynthetic process and thyroid hormone generation. Predicted to be located in extracellular region. Predicted to be part of follicle-stimulating hormone complex. Predicted to be active in extracellular space. Is expressed in several structures, including adenohypophyseal placode; female organism; hypophysis; kidney; and male organism. Orthologous to human CGA (glycoprotein hormones, alpha polypeptide).

NR:

description
PREDICTED: glycoprotein hormones alpha chain 1

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112771 True 812 TUCP 0.40 5 26434472 26470163
XM_007257424.2 False 746 mRNA 0.42 4 26468159 26470128

Neighbor

gene id symbol gene type direction distance location
kcnk10 kcnk10,LOC107707802,LOC107552901,LOC103379602,LOC106601399 coding downstream 45214 26370043 ~ 26389258 (-)
sntg2 sntg2,LOC107663169,LOC107678740 coding downstream 302708 26060812 ~ 26131764 (-)
tpo tpo coding downstream 375969 26017338 ~ 26058503 (-)
tmx4 LOC108423553 coding downstream 602360 25813873 ~ 25832112 (-)
hao1 hao1,LOC107678730,LOC107663152 coding downstream 622299 25792548 ~ 25812173 (-)
LOC103024701 otofb,LOC108423539,LOC108269528 coding upstream 38106 26508269 ~ 26534395 (-)
gjd2 gjd2 coding upstream 590361 27060524 ~ 27063834 (-)
aqr aqr coding upstream 609178 27079341 ~ 27140479 (-)
dph6 dph6,LOC106512485 coding upstream 678434 27148597 ~ 27428801 (-)
meis2 meis2 coding upstream 1056579 27526742 ~ 27608642 (-)
G83694 NA non-coding downstream 40370 26392868 ~ 26394102 (-)
G83652 NA non-coding downstream 107187 26326039 ~ 26327285 (-)
G83643 NA non-coding downstream 155959 26278100 ~ 26278513 (-)
G83635 NA non-coding downstream 229087 26204986 ~ 26205385 (-)
G83616 NA non-coding downstream 404232 26007715 ~ 26030240 (-)
G83844 NA non-coding upstream 248196 26718359 ~ 26719413 (-)
G83859 NA non-coding upstream 254615 26724778 ~ 26725100 (-)
G83860 NA non-coding upstream 254957 26725120 ~ 26725337 (-)
G83842 fermt2 non-coding upstream 257816 26727979 ~ 26747709 (-)
G83863 fermt2,LOC107565223 non-coding upstream 298466 26768629 ~ 26777450 (-)
G83612 NA other downstream 430787 25992499 ~ 26003685 (-)
LOC103040243 tdh,LOC103040243,LOC108441731,LOC107561940,LOC107723287,LOC107589050,LOC107701506,LOC107746115,LOC105018021,LOC104922441 other downstream 1393418 25034004 ~ 25041054 (-)
LOC103026430 LOC108428707,LOC108269919,LOC107102228,LOC103379330,LOC101162185 other downstream 1798591 24630879 ~ 24635881 (-)
cunh6orf183 zbtb24 other downstream 1817856 24588941 ~ 24616616 (-)
G82991 LOC108428614,LOC108269476,LOC107734364,LOC107693224,LOC107589682 other downstream 2416816 24012634 ~ 24017656 (-)
LOC103043566 LOC108423527,LOC108270165,LOC100330554,LOC107677688,LOC103153288,LOC103458816,LOC106945627,LOC103355980,LOC102293757 other upstream 1360465 27830628 ~ 27848444 (-)
G84215 NA other upstream 1874426 28344589 ~ 28356545 (-)
rps6kl1 rps6kl1 other upstream 2205435 28675598 ~ 28694982 (-)
G84392 NA other upstream 2605313 29075476 ~ 29076115 (-)
G84579 nol10 other upstream 3338366 29808529 ~ 29810277 (-)

Expression


Co-expression Network