G83759


Basic Information

Item Value
gene id G83759
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26719635 ~ 26723005 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU112851
TGTTAAGATGCACCTTttgggtcagtttcccagacagacaTTACGTTTAGTTGTAGGCGTagtcttttaattaaaaatctttgttcaaaatatgtaatgcaggactaggcttaatccctgtttggCAAACTGCATCTGTGATGTCTATGGTGCAAATAAAATTTTGCATTCCACTGGTTTCACACTAATGATGTTCAGTGTGTGGTTTAGAATTTACTTTATACCCACCCTAACCTACGATCAAAGTTTAGTTGCTGCAActggctgcttttttttttttctttgttgtttttgttttttaagccaAACCTTATCTGTTACCATCTGCCTACAGTATGTTAAGTAATGAATCACACCTGGTTCATTGTTACTTTGAAGTTCTAGAACTACTGTGTAGCTCTAATGAAATGAATTAACTCCTCATTGTTGTACATAACTTTTCTAAACCGAGCCAAATGCAGAAATGCAGAGTGGATTGAAAGGAACTGATTGATAGAATAGCTGTAAGGCAGGATcatgtgtatagtatagtacatgACTGCATTCAGAGATTTGGCAGAACGTTATCATGTCCCTTTCTCTCATGCTAAAAGTGTAATATTATTCAAGCACTATTTTGTTTACATTGAGACCCATAGTAATAAAGGAAGagagatatataatatatattttatatctatttagTTAATGACTGTGGGACTGATAGTGATAGCCCTTCATTGTTGTGATACTCCACTTGGAGGCCAAACATTTCTAATGTTCCTGCTGTGTGTAAACCTGCTGCTCATAGAGCTAGTCTTAGTTCATGTTAAGGCTTTTAGTTGTGTATTTTAAAAGCACTTTTGAGATGTTGAAGTCAGATCTGCACAGAGAAACCAATGCCTGAgtggctgtaaaaaaaaagaaatggaacTAATCTATCAGAGACGTTGTCTATCCTGTTTTGTCTGCATTGTGTCTGCACTCTCTTTGTTGTCCCAGAGAACATTGGGCCCTTCCATTCCTCGAGTTCATCATGGTTGACCATCTGTTACCCTGTTACCATGTTGCACCTATGTGGAACACTTCAAGTTAAGGGCTGCAGTTTGCATCGTATGTGATATATATTAACACAACATCCATTACAGTTACATGCCATATGTCATGGGACAGTAACTAGTATTGTGTTCAGTAATACTTTTAAGCTTctttaaagaatgctgcactccattgaatgtggatgtgactTCTGATGGTCTTTTTGTTTCTTCGCACAGATAATTCTAGCCAGAATCCTCTGGTCACGATCATTTTACCACCATCTACTAGTTCGCTGTTGGTGGTAATGCCAGTATATGCATTAAAAACATCATCACCCACTACCAGGCCTCCCTCAGACTCCATTAGCATGCTGGTGTTTTACCTCACACACAATATAACAAATCCTCACAACTCATACAGGTGTAGCCATTCCTAAGCCGTCCCCTGAGGTTACACTTAATGAACACTTTACGCTTTACTGCTATCCCATTGCATAtcattgtactgtatatttgtcaGTTATGTTTCTATGTATGTATTACTAAGCCAGTAAGCTTAGTAATGtggatattttaaaaatatcagtCAGGCCGCCTCTCAGGACCATGGGGCTGGTCCACTACCGAGAAGCTGACGTGGCTTTTCCCTCGCACTGGATGAACCAGAGCTATTTATGACtcagtgttgtttttgttggCAATAGGAGACCGAAATGAATGAAGGTCCATCCCTTGCACGTACTGTACGGCTATAAATTGCACATGACTGATGACTAAAGACCCCCTAGATATGCTTCACTGTTTTTAATACTTCAAAAATTGCATTATGTTCACatgaactgaatcatttgtattgtattttattatttttttttatttaaatgtcaagattttattttggatatatgTAATTCTTTTGGCCATATTTCTGTCTATTCCCTGCAGACCATACCTCAGAATCTTTGTATGCTTTAGTGATAACTAAATTGGCTGATTGAATCCTTTAGGAAAATAGGCAATTAATTCTTTCTAGTTTTACAATATGATCTTTTTGCgtcagtaattaaaaaaaactgagctGCATCAGCTAGATCTCCAAGACAACACAGAGCTAAGACTACCCTCAAAAACCTGATATGGGCACAGTGTTAAGAAGTTACAAGATCCGCTTTAGCATGATACATCAGCAATTGCAGATGTGAACTTTGCTCTGATGCATGCTTGGGTTTTAGGTGTTTTAAGGATGATGCATTAACTGATATGTTTGAATACTATGGTACCTAGGCTACATTTACGACTTTTTCATAATAACTCCAAATCATAAAAAAGCTTAGGATCgtatgtttcttacatttactttgacttttatttcattttagagagtgtgaacccaagatatttcatgtttgtctggactgtaaagcatttaccacttAGTAATGTTTCCTTTCCTTCTCACAACATTTTGGCATTGAGAATACCAAGCAGTGAAGTGTTTTAGgtgctttttgtctcttttatcTTGCAAAATGTCTTAATGTGTGCAATAGTACCACGTTGCTCATTATGTCCATTTCTTTCAAAAGAGATTCGGAATTCTGTCCGTCCTAGATGCCCAGAGAAGTCAATGCAGCTTTTGGTCATGATTAACACAAGACTTCTGTTTTGCACTGTGGTGTTTTAAGATGCATTTGTGAATGTAGcgccatattttattttgtactttggtttgccatcagctgttaTTCAATGACAGTTCTAGTCTAGGTGGCATCATCTGTTagttttagtatatatatattttttcaaaccTCAACACTACCCCTAAATGGCTTCCATCccattatatatacacaaatttgaacaaaaaaagaaatacctTGGGTTTATACGGTCTGCAATAACATtaaatcaaagtaaatgtaaacagGTTTTCCCATACTGTCCcaatgataatgttttttttttttatatatatatataaacccttAACCCTTCTTCTTGGGCATCGCATGTTGAAGGATCATGTTTGTTTGTCATTGGCTTATCTCTTAGGTGTAGTATTGTCAATAACATTGTGTTCTTCACACTTTTCTGTAAAATTCAGTCAAAGAGTCCAGCAGGTATCCTCCACATCTGGTTATAGATTAACCAGAAACACAGAAGGTGTCCCTTAACGactgttatttaaatgtaacttaaTGGCATTGAGCTTGAAAAGGAGAGCTGTGCAATAACCCATGCCTGTAATGGATTCAAACTGCCATCCGAATAACActgtatttatttcagtttattaaaGCATTACTTTTTTTGGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112851 True 3339 lncRNA 0.36 2 26719635 26723005

Neighbor

gene id symbol gene type direction distance location
LOC103023862 ddhd1 coding upstream 3620 26693418 ~ 26716015 (+)
bmp4 bmp4 coding upstream 105871 26604718 ~ 26613764 (+)
snx14 snx14 coding upstream 213123 26488033 ~ 26506512 (+)
LOC103026145 LOC108270054,LOC108423543 coding upstream 235013 26474775 ~ 26484622 (+)
LOC103029223 akirin2,LOC100499587,LOC100379102 coding upstream 285443 26425098 ~ 26434192 (+)
stxbp6 stxbp6 coding downstream 72803 26795808 ~ 26897068 (+)
c9h15orf41 cunh15orf41,c9h15orf41,cssa01h15orf41,clg19h15orf41,LOC105897278 coding downstream 705747 27428752 ~ 27506291 (+)
spred1 spred1 coding downstream 1047788 27770793 ~ 27813908 (+)
LOC103043868 atxn3,LOC108423524,LOC106596382,LOC107575702,LOC107683100 coding downstream 1125672 27848677 ~ 27855382 (+)
LOC103042318 LOC103042318,LOC108423523 coding downstream 1132736 27855741 ~ 27858741 (+)
G83760 NA non-coding upstream 270 26718978 ~ 26719365 (+)
LOC111193231 NA non-coding upstream 153791 26507339 ~ 26565844 (+)
trnay-gua_9 NA non-coding upstream 211510 26508040 ~ 26508125 (+)
G83672 NA non-coding upstream 296574 26422514 ~ 26423061 (+)
G83663 NA non-coding upstream 379363 26339831 ~ 26340272 (+)
G83761 NA non-coding downstream 1334 26724339 ~ 26724613 (+)
LOC111193232 NA non-coding downstream 181876 26904881 ~ 26924218 (+)
G83785 NA non-coding downstream 324541 27047546 ~ 27054268 (+)
LOC111193233 NA non-coding downstream 347700 27070705 ~ 27082187 (+)
G83795 aqr non-coding downstream 364195 27087200 ~ 27100573 (+)
spata7 NA other upstream 320368 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 392297 26321185 ~ 26327338 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other upstream 414252 26275001 ~ 26305383 (+)
G83602 NA other upstream 466033 26235498 ~ 26253602 (+)
LOC103033015 LOC108423550,LOC108270308 other upstream 744352 25919557 ~ 25975283 (+)
fermt2 fermt2 other downstream 4818 26727823 ~ 26777488 (+)
fam98b NA other downstream 1092800 27815805 ~ 27822211 (+)
LOC103044189 LOC108423527,LOC107677688 other downstream 1101251 27824256 ~ 27831584 (+)
LOC107197841 NA other downstream 2247259 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 2276497 28999502 ~ 29025114 (+)

Expression


Co-expression Network