LOC111193233


Basic Information

Item Value
gene id LOC111193233
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27070705 ~ 27082187 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU112893
GCgtttttattacaaaatgcaaacaaaaaggtctgttacattattttctcagcagtttaaaaaaagattaacaacaagaaagaaaaagtgtggTAAATCAGGGTCACCAATCTTCTCCACAAATATCAGTGTGACTGCCGGTTTTACATATGGCCCTTCCTGTAATGAATGTGCTTTCTGCCAGAGCCTGTTCAGTCTAATTCCAGCCAGACTCTGCTGCTCAGGATCACTGCCACCCACTGAACTGCACATTACAATTCATTCTGGGTAATAAGGGCTTTGTCAGTACATGTCACTGTAGAGTAGAAAACATTAAATGTCCACAACTCAATCTACATGTCTGGCAttcactatcaggcctcacttcATCTCTGATCATTTACCATGTCATGAGTGTGCTAGCTAGTGCTAAACCTCACACCTTaaatctcctgtataacactgaaCAGTTTGCATACTGCTGGCCTATGATGCATGTCCATGTACAATCAGCCAATATTAAATTAGGAGATCTATTATTTAAACAAGTAAAATTACATGTCTTCCCTGCAGCATTTACTGACCCTCATAGATAAAAATGGTGACCACTGGAAGCCATGGGTAAGTATTTTCTTCACGGCTCCTCCTCACTGTCCCCGCTGTCACTGTCTCTACCGGGGTGTTCAGGCATTTTAGCATGTTCCACTGTCTGAGACTCCTCCTCAGTCTTCTTCTGAGATTTTGACTCCTCCTCCATCTTTGTCTGAGATCCTGACTCCTCCACTTCCTTACTTTCACTCTTGGCTTTTTCCTCAGCAGCCGGAGTGTTCTCCTCACCCTCTTCCTCCATGTTCACATCAGGTTTCTCCTCTGCAATTACCTGCCGAGGAGGTGGAAGAAGcttctgttgctgctgctgctCCTGTCGGTACTGCTGGGTGCTCTGCAGCATGTGCATATACGTATTGTAGACCAGGTTGGCCATCTCAGGCATGTTCTTTATTACTTGATCAGGCCGGGCTGAGCGTGGTTCAGTCTGTATGGAAAGACAGCGACAGGAACGGAAAGAGTACATTTGTCTTCTGTAAAGAAGTTTCCTAGCATTCAGTGTGATGCATGGAATCTAACATTACCTACTCTATTTACTGGACATGACTGTTTTAGATAGAGACTGGATATTGAATTTACACGGCAGGACAGGAACAGAGTAATACATCATAAATAGAGGCTATGCACCAACAAAGGACAGcactgaaaagaaaaagagctgTCCATCACTCAATGGAGTGTGTATTTTTACAAGGGGAAGACCCAGTCAATCACACAACACATTATATTTCTGCCTGAGACATAACTGAATGCAGTTTTGTAGCAATACATGGTGAATTATATCAATGGCTGTAGTAACAAAAAGGAAAACACCTTAAAAAAGTCAATCAATAGAAGTCAAATGTGAAAAGGATTTTTGTTGGTCCATTTGTTATGATTCAGACGTTAAgagaaaacagata
>TU112896
TTAgagagcagccaggtgagtcAGAGATTGCCCCCCAGGGTAAAAATCGTGTAATTTATAATCCTGTGCCGCTTATGTAGTGTGAAATTCAcaacaactgaaggactcgCGAGTAACAGCACAACCAGTCGACTTCATGAGAGGTGTAGTGAGAGGCAGGCAGTAGAGGTAATTTATACAGTCTGTGGTTCAAACGGACGTTTCTAACTGACGGCTATTGAAAAACCACTGGCAATATGGCGGCaccaagcgaccaaagaaacacacaaatgtTAACAAGATCCCCaggactctttctctctccctgacGGTGAATTTATCCAACAAGCAGAAGCTTCTATGGGTCTCCCGTTTACTCCTCTGACCCTCAATACTGCAGGATTAAAAAgctctttttttctccttttacaAAGAATGGGCTCATCCAAGCAAGGAAACCTTGGGAGTTTTCTACTTGTACTCTTTTGGGACTAAGTATGCTACATAGAAACAGGTTTCTCCTCTGCAATTACCTGCCGAGGAGGTGGAAGAAGcttctgttgctgctgctgctacaagGAGGCAGAGACAAAAGAACACACTCGTGTGAAATCATGCATTCAATGATGAGCATGTcaatattact
>TU112899
TTAgagagcagccaggtgagtcAGAGATTGCCCCCCAGGGTAAAAATCGTGTAATTTATAATCCTGTGCCGCTTATGTAGTGTGAAATTCAcaacaactgaaggactcgCGAGTAACAGCACAACCAGTCGACTTCATGAGAGGTGTAGTGAGAGGCAGGCAGTAGAGGTAATTTATACAGTCTGTGGTTCAAACGGACGTTTCTAACTGACGGCTATTGAAAAACCACTGGCAATATGGCGGCaccaagcgaccaaagaaacacacaaatgtTAACAAGATCCCCaggactctttctctctccctgacGGTGAATTTATCCAACAAGCAGAAGCTTCTATGGGTCTCCCGTTTACTCCTCTGACCCTCAATACTGCAGGATTAAAAAgctctttttttctccttttacaAAGAATGGGCTCATCCAAGCAAGGAAACCTTGGGAGTTTTCTACTTGTACTCTTTTGGGACTAAGTATGCTACATAGAAACAGCATTTACTGACCCTCATAGATAAAAATGGTGACCACTGGAAGCCATGGGTTTCTCCTCTGCAATTACCTGCCGAGGAGGTGGAAGAAGcttctgttgctgctgctgctacaagGAGGCAGAGACAAAAGAACACACTCGTGTGAAATCATGCATTCAATGATGAGCATGTcaatattactgttattatattgATGTGTTATTAAAGTGAGCAGCATCTTCac
>XR_002650369.1
tagtatttCTCTGCCTGGGTAATACATGTCGATACATTTGACACGTTTGGAAACTGTTAATTTTGGACTCCCTTCTAGTGGGTACTCTCCTCTGTAGAGAGTCTCTGGCATCGCTAGTTCTCGCGTAGTTTAGTTCTGGCGTGTTTTAgagagcagccaggtgagtcAGAGATTGCCCCCCAGGGTAAAAATCGTGTAATTTATAATCCTGTGCCGCTTATGTAGTGTGAAATTCAcaacaactgaaggactcgCGAGTAACAGCACAACCAGTCGACTTCATGAGAGGTGTAGTGAGAGGCAGGCAGTAGAGGTAATTTATACAGTCTGTGGTTCAAACGGACGTTTCTAACTGACGGCTATTGAAAAACCACTGGCAATATGGCGGCaccaagcgaccaaagaaacacacaaatgtTAACAAGATCCCCaggactctttctctctccctgacGGTGAATTTATCCAACAAGCAGAAGCTTCTATGGGTCTCCCGTTTACTCCTCTGACCCTCAATACTGCAGGATTAAAAAgctctttttttctccttttacaAAGAATGGGCTCATCCAAGCAAGGAAACCTTGGGAGTTTTCTACTTGTACTCTTTTGGGACTAAGTATGCTACATAGAAACAGCATTTACTGACCCTCATAGATAAAAATGGTGACCACTGGAAGCCATGGCAGCCGGAGTGTTCTCCTCACCCTCTTCCTCCATGTTCACATCAGGTTTCTCCTCTGCAATTACCTGCCGAGGAGGTGGAAGAAGcttctgttgctgctgctgctacaagGAGGCAGAGACAAAAGAACACACTCGTGTGAAATCATGCATTCAATGATGAGCATGTcaatattactgttattatattgATGTGTTATTAAAGTGAGCAGCATCTTCa
>XR_002650370.1
CTGCCTGGGTAATACATGTCGATACATTTGACACGTTTGGAAACTGTTAATTTTGGACTCCCTTCTAGTGGGTACTCTCCTCTGTAGAGAGTCTCTGGCATCGCTAGTTCTCGCGTAGTTTAGTTCTGGCGTGTTTTAgagagcagccaggtgagtcAGAGATTGCCCCCCAGGGTAAAAATCGTGTAATTTATAATCCTGTGCCGCTTATGTAGTGTGAAATTCAcaacaactgaaggactcgCGAGTAACAGCACAACCAGTCGACTTCATGAGAGGTGTAGTGAGAGGCAGGCAGTAGAGGTAATTTATACAGTCTGTGGTTCAAACGGACGTTTCTAACTGACGGCTATTGAAAAACCACTGGCAATATGGCGGCaccaagcgaccaaagaaacacacaaatgtTAACAAGATCCCCaggactctttctctctccctgacGGTGAATTTATCCAACAAGCAGAAGCTTCTATGGGTCTCCCGTTTACTCCTCTGACCCTCAATACTGCAGGATTAAAAAgctctttttttctccttttacaAAGAATGGGCTCATCCAAGCAAGGAAACCTTGGGAGTTTTCTACTTGTACTCTTTTGGGACTAAGTATGCTACATAGAAACAGCAGCCGGAGTGTTCTCCTCACCCTCTTCCTCCATGTTCACATCAGGTTTCTCCTCTGCAATTACCTGCCGAGGAGGTGGAAGAAGc
>XR_002650371.1
tagtatttCTCTGCCTGGGTAATACATGTCGATACATTTGACACGTTTGGAAACTGTTAATTTTGGACTCCCTTCTAGTGGGTACTCTCCTCTGTAGAGAGTCTCTGGCATCGCTAGTTCTCGCGTAGTTTAGTTCTGGCGTGTTTTAgagagcagccaggtgagtcAGAGATTGCCCCCCAGGGTAAAAATCGTGTAATTTATAATCCTGTGCCGCTTATGTAGTGTGAAATTCAcaacaactgaaggactcgCGAGTAACAGCACAACCAGTCGACTTCATGAGAGGTGTAGTGAGAGGCAGGCAGTAGAGGTAATTTATACAGTCTGTGGTTCAAACGGACGTTTCTAACTGACGGCTATTGAAAAACCACTGGCAATATGGCGGCaccaagcgaccaaagaaacacacaaatgtTAACAAGATCCCCaggactctttctctctccctgacGGTGAATTTATCCAACAAGCAGAAGCTTCTATGGGTCTCCCGTTTACTCCTCTGACCCTCAATACTGCAGGATTAAAAAgctctttttttctccttttacaAAGAATGGGCTCATCCAAGCAAGGAAACCTTGGGAGTTTTCTACTTGTACTCTTTTGGGACTAAGTATGCTACATAGAAACAGCATTTACTGACCCTCATAGATAAAAATGGTGACCACTGGAAGCCATGGGTTTCTCCTCTGCAATTACCTGCCGAGGAGGTGGAAGAAGcttctgttgctgctgctgctacaagGAGGCAGAGACAAAAGAACACACTCGTGTGAAATCATGCATTCAATGATGAGCATGTcaatattactgttattatattgATGTGTTATTAAAGTGAGCAGCATCTTCa
>XR_002650372.1
TGCCTGGGTAATACATGTCGATACATTTGACACGTTTGGAAACTGTTAATTTTGGACTCCCTTCTAGTGGGTACTCTCCTCTGTAGAGAGTCTCTGGCATCGCTAGTTCTCGCGTAGTTTAGTTCTGGCGTGTTTTAgagagcagccaggtgagtcAGAGATTGCCCCCCAGGGTAAAAATCGTGTAATTTATAATCCTGTGCCGCTTATGTAGTGTGAAATTCAcaacaactgaaggactcgCGAGTAACAGCACAACCAGTCGACTTCATGAGAGGTGTAGTGAGAGGCAGGCAGTAGAGGTAATTTATACAGTCTGTGGTTCAAACGGACGTTTCTAACTGACGGCTATTGAAAAACCACTGGCAATATGGCGGCaccaagcgaccaaagaaacacacaaatgtTAACAAGATCCCCaggactctttctctctccctgacGGTGAATTTATCCAACAAGCAGAAGCTTCTATGGGTCTCCCGTTTACTCCTCTGACCCTCAATACTGCAGGATTAAAAAgctctttttttctccttttacaAAGAATGGGCTCATCCAAGCAAGGAAACCTTGGGAGTTTTCTACTTGTACTCTTTTGGGACTAAGTATGCTACATAGAAACAGGTTTCTCCTCTGCAATTACCTGCCGAGGAGGTGGAAGAAGcttctgttgctgctgctgctacaagGAGGCAGAGACAAAAGAACACACTCGTGTGAAATCATGCATTCAATGATGAGCATGTcaatattactgttattatattgATGTGTTATTAAAGTGAGCAGCATCTTCa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112893 True 1490 lncRNA 0.42 2 27079360 27082187
TU112896 False 625 lncRNA 0.44 4 27070850 27080331
TU112899 False 715 lncRNA 0.44 5 27070850 27080373
XR_002650369.1 False 904 lncRNA 0.44 5 27070705 27080372
XR_002650370.1 False 714 lncRNA 0.46 4 27070715 27080240
XR_002650371.1 False 859 lncRNA 0.44 5 27070705 27080372
XR_002650372.1 False 800 lncRNA 0.44 4 27070716 27080372

Neighbor

gene id symbol gene type direction distance location
stxbp6 stxbp6 coding upstream 173637 26795808 ~ 26897068 (+)
LOC103023862 ddhd1 coding upstream 354690 26693418 ~ 26716015 (+)
bmp4 bmp4 coding upstream 456941 26604718 ~ 26613764 (+)
snx14 snx14 coding upstream 564193 26488033 ~ 26506512 (+)
LOC103026145 LOC108270054,LOC108423543 coding upstream 586083 26474775 ~ 26484622 (+)
c9h15orf41 cunh15orf41,c9h15orf41,cssa01h15orf41,clg19h15orf41,LOC105897278 coding downstream 346565 27428752 ~ 27506291 (+)
spred1 spred1 coding downstream 688606 27770793 ~ 27813908 (+)
LOC103043868 atxn3,LOC108423524,LOC106596382,LOC107575702,LOC107683100 coding downstream 766490 27848677 ~ 27855382 (+)
LOC103042318 LOC103042318,LOC108423523 coding downstream 773554 27855741 ~ 27858741 (+)
ddx24 ddx24 coding downstream 778007 27860194 ~ 27869973 (+)
G83785 NA non-coding upstream 16437 27047546 ~ 27054268 (+)
LOC111193232 NA non-coding upstream 146487 26904881 ~ 26924218 (+)
G83761 NA non-coding upstream 346092 26724339 ~ 26724613 (+)
G83759 NA non-coding upstream 347700 26719635 ~ 26723005 (+)
G83760 NA non-coding upstream 351340 26718978 ~ 26719365 (+)
G83795 aqr non-coding downstream 5013 27087200 ~ 27100573 (+)
G83805 aqr,LOC108423414 non-coding downstream 51788 27133975 ~ 27140397 (+)
G83824 NA non-coding downstream 161569 27243756 ~ 27244268 (+)
G83826 NA non-coding downstream 186771 27268958 ~ 27269231 (+)
LOC107197843 NA non-coding downstream 522050 27604237 ~ 27615567 (+)
fermt2 fermt2 other upstream 293217 26727823 ~ 26777488 (+)
spata7 NA other upstream 671438 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 743367 26321185 ~ 26327338 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other upstream 765322 26275001 ~ 26305383 (+)
G83602 NA other upstream 817103 26235498 ~ 26253602 (+)
fam98b NA other downstream 733618 27815805 ~ 27822211 (+)
LOC103044189 LOC108423527,LOC107677688 other downstream 742069 27824256 ~ 27831584 (+)
LOC107197841 NA other downstream 1888077 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 1917315 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 1958792 29040979 ~ 29041607 (+)

Expression


Co-expression Network