G83972


Basic Information

Item Value
gene id G83972
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27704254 ~ 27704881 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113109
cgctttttacaacaggtgttggcacaaagcagctttacagaaacatgattacaggacaaagaatcaggcaaaacattacacatagaaaatacagaatacagaacccccagtgagcgcggaggcaaggaaaaactccctcagagctgcaggaggaggaagaaaccttgggaggaccaagactcacattaaaggggggaccatcctaccactggtcaaacggcttttaaattaaaatttaaaaagtcttttatacatccatataggttttatgtactcaggagtgtaatagcgccactaatggcttggatgtaatctgtagtggagagtaagatggtcgatgagcagctgatctgtggtggtggtggagaagagctgacttcagaaacttccatcagtctggctggacaggagacgcgagagcctgagggtccaacatcggtatcgggtcagacaggtgggcagtcagtaactcggaggaaagcagagagatggaattagtttttactggatttatgcaaaactgagaatattaaaacattatcagagtgtggcaaatgactccggcagaactgaataaaacagcctaactaaaggcagagagccagaaggtaacatagacatggaggca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113109 True 628 lncRNA 0.45 1 27704254 27704881

Neighbor

gene id symbol gene type direction distance location
c9h15orf41 cunh15orf41,c9h15orf41,cssa01h15orf41,clg19h15orf41,LOC105897278 coding upstream 197963 27428752 ~ 27506291 (+)
stxbp6 stxbp6 coding upstream 807186 26795808 ~ 26897068 (+)
LOC103023862 ddhd1 coding upstream 988239 26693418 ~ 26716015 (+)
bmp4 bmp4 coding upstream 1090490 26604718 ~ 26613764 (+)
snx14 snx14 coding upstream 1197742 26488033 ~ 26506512 (+)
spred1 spred1 coding downstream 65912 27770793 ~ 27813908 (+)
LOC103043868 atxn3,LOC108423524,LOC106596382,LOC107575702,LOC107683100 coding downstream 143796 27848677 ~ 27855382 (+)
LOC103042318 LOC103042318,LOC108423523 coding downstream 150860 27855741 ~ 27858741 (+)
ddx24 ddx24 coding downstream 155313 27860194 ~ 27869973 (+)
LOC103042002 LOC108423517 coding downstream 176147 27881028 ~ 27894983 (+)
LOC107197843 NA non-coding upstream 88687 27604237 ~ 27615567 (+)
G83826 NA non-coding upstream 435023 27268958 ~ 27269231 (+)
G83824 NA non-coding upstream 459986 27243756 ~ 27244268 (+)
G83805 aqr,LOC108423414 non-coding upstream 563857 27133975 ~ 27140397 (+)
G83795 aqr non-coding upstream 603681 27087200 ~ 27100573 (+)
LOC111193235 LOC103459065 non-coding downstream 127096 27831977 ~ 27845966 (+)
G84001 NA non-coding downstream 218188 27923069 ~ 27923358 (+)
G84164 NA non-coding downstream 596852 28301733 ~ 28360989 (+)
LOC111193142 NA non-coding downstream 623894 28328775 ~ 28331408 (+)
G84219 NA non-coding downstream 669067 28373948 ~ 28374517 (+)
fermt2 fermt2 other upstream 926766 26727823 ~ 26777488 (+)
spata7 NA other upstream 1304987 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 1376916 26321185 ~ 26327338 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other upstream 1398871 26275001 ~ 26305383 (+)
G83602 NA other upstream 1450652 26235498 ~ 26253602 (+)
fam98b NA other downstream 110924 27815805 ~ 27822211 (+)
LOC103044189 LOC108423527,LOC107677688 other downstream 119375 27824256 ~ 27831584 (+)
LOC107197841 NA other downstream 1265383 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 1294621 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 1336098 29040979 ~ 29041607 (+)

Expression


Co-expression Network