fam98b


Basic Information

Item Value
gene id fam98b
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27815805 ~ 27822211 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113122
TGAGCTGTGGTGGAACTCAGAAAGGCGAATCGTGTTGCAGCACGGAGGAGTTTCAGGGTGCGGACTCGCTCTGTGCGCTAGCTgctaggctaatgctaattttcTCCGCTCGCTCCGTTTTCTCTGGTTTTCTCAGTGTTATTTTAGTGGAGCGGTATGGAGAGCGATATACTGGACTGTCTGGATCAGGTCGGATACACTGGAGACCTGGATAATGAAAAGGCCCTTTTAACAGCATGTGAGGGCGGGTTTTCCTCTCAGGAGTATGTGGGACTGTGTTCGTGGTTGGCAGAAAAACTGAAGCAGTATTGTGGTCTCAAGGGTCAAGAATCAGAAACATCAGATGATTCCCAGACTGTGAGGATTCACTTTGGAAAGTTACTTGAAGAGCTGGAATGTCCATATAAGGGAATTGTTTCAGGGTTAACAGAAGGGGAACTGAAGAGCAAAAAAGATCATCTAAAAATTGTGTTGTTTCTGGTATCTGAACTTCAGGCTGCACAGGTTGTGGCCGGCAAGTCTGGAGCAGACAGAAAGACTGAAAAACAGATTACACCTTTAAAAGATCTACAAGCGATttgtaaaacactaaaactctcAGAACCAGACCAGCAACCGACAGCAGACACATTCTCATCAATAGAAAACCAGGTTAATGTCTTGCTCAAGAAAGTCCCAGAGAAGCATATTGGCAAATCAGCGCTGAAGCACTCCCCTAACAGTGACCAATGGAGGCAGCTGGAGAAGATAAATCGAGTTCTTTCTACAGACTATGACTGTCGTCGGCGCATGCTGATCAAACGGCTGGATGTCACTGTGCAGTCTTTTGGCTGGTCTGACAGAGCTAAGGCAGGTTCAGCTGCAGTCTCATCTTCTTGTGATTATTCTGTTTC
>TU113127
caagccggttcaataaaggagctgttgagcattcagcatgagtctcacggccacacacacaacccagagccgccacaatatgATTCCAGCAGTACACTTAAACAGACTCCATCCATACATatccagatatttaaaaaaaaaacggaggtgtttgtgtgtgtttcggCTTCCAGTccgaattttttatttttcttaaatgaAGCTTTCCAAAAACACTCTCCAAACaggatgtttttgttttcagtgttatCATGTAGACAGGGTAAACAGCTTTatgaaaacactgaaattaagATATGCATGCTAAATCTCAAATACCTCACATTCTCACTCCCTATTTAGTGCATAAAACTGCAAAATATACAGACATTGCATATGGCACTACATTTAATGTTGTATTACAAACATATAATGCTCTGTTTCTCTATTAGACTTTAGATTCTGTAATTTTTTCTTCCATCATACGCTGTTTAGGGAGTAATGGATGCATGTAGCTCTGGGTAGTGATCAAACcttctttgttttcttctttggGGTTGATGTCTCTTTTTATAAGGTTCTATTGGCCCAATACAGTGTTAGCTTGCTCATACTACGTGCAAGTTCTTTTGTCTCTGTGGatggaaattattttaaaaatggagggagggagatcacatttttttttccttttttttttttttttatatccggATAAGAAGCAATGAGATTTTCTTGATGAAAAGTATAGGATTCATTGACTGATGTAAACTGAACTTTCAGCAGCTTTAAATTAGCCGCGGTAATCTAACAagtgacttttttattttttagaactttgtcgtatttttttttatgtttcttctCAAATCGTGTAActtaaatgtttttggacacgTTTATTTGACTATAGGCTAGAATTGAATAGGAAGTGTTATTGCATCTGTACGGTTTCTACAAATGCTGCCTGTTCCTAGGCAGTGAGTGTTGTGGACTAAGAATGATGTGGACTAActcaataaatatatgtttCCGTTTTTTCCTCCTTGCTGAAccttctgtaaaaaatataataaaacagaacTGAGA
>XM_022673084.1
AATCGTGTTGCAGCACGGAGGAGTTTCAGGGTGCGGACTCGCTCTGTGCGCTAGCTgctaggctaatgctaattttcTCCGCTCGCTCCGTTTTCTCTGGTTTTCTCAGTGTTATTTTAGTGGAGCGGTATGGAGAGCGATATACTGGACTGTCTGGATCAGGTCGGATACACTGGAGACCTGGATAATGAAAAGGCCCTTTTAACAGCATGTGAGGGCGGGTTTTCCTCTCAGGAGTATGTGGGACTGTGTTCGTGGTTGGCAGAAAAACTGAAGCAGTATTGTGGTCTCAAGGGTCAAGAATCAGAAACATCAGATGATTCCCAGACTGTGAGGATTCACTTTGGAAAGTTACTTGAAGAGCTGGAATGTCCATATAAGGGAATTGTTTCAGGGTTAACAGAAGGGGAACTGAAGAGCAAAAAAGATCATCTAAAAATTGTGTTGTTTCTGGTATCTGAACTTCAGGCTGCACAGGTTGTGGCCGGCAAGTCTGGAGCAGACAGAAAGACTGAAAAACAGATTACACCTTTAAAAGATCTACAAGCGATttgtaaaacactaaaactctcAGAACCAGACCAGCAACCGACAGCAGACACATTCTCATCAATAGAAAACCAGGTTAATGTCTTGCTCAAGAAAGTCCCAGAGAAGCATATTGGCAAATCAGCGCTGAAGCACTCCCCTAACAGTGACCAATGGAGGCAGCTGGAGAAGATAAATCGAGTTCTTTCTACAGACTATGACTGTCGTCGGCGCATGCTGATCAAACGGCTGGATGTCACTGTGCAGTCTTTTGGCTGGTCTGACAGAGCTAAGGCAAAAACAGACATAATGGCCAAGGCCTATCAGCCAAAGAGACACTCCCTGACACTAAAGTCATCTGTGAGCCTTGCTCATCTCCTGGCAGCACGAGAAGATATCTGCAATGTGGTGAAGACAAGCAGTGGCACTAGCAGAGAGAAGACTGTCTGTGCTGTAAACAAAGTGCTTATGGGAAGAGTTCCTGATCGAGGTGGGAGGCCCTCAGAGATTCAAGCTCCTCCCCCTGAGATGCCACCTTGGCAGAAACGACAAGAtggaggaggacgaggaggaggtGGATATAGAGGAGGAGGATATGGTGGAGGTGGACGTGGGGGTGGAGGATATGGTGGAGGTGGACGTGGGGGTGGAGGATAtggcggaggaggaggaggatacGGCGGCGGGGGAGGAGGTGGTTATGGAGGTGGAGGATATGGAGGAGGTGGACATGGGAGTGGAGGCTACGGAGGCGGTGGTGGATCAAGAGGTGGGTGGGGTCGAGGAGGTGGAGGACGAGGCGGTTATTATCGatgaccgttttttttttttttttttggtacttttttttaagaagcatTGGAATGGAAGCGCATGTATTGGGATGCATTCAGTCTGTCCAGCAGGattttttcgttattttattctcATCTGTACCATGCTCAGAGACTGAACATAGCATTGAGAATGAGTTTAAATAAGAAATAGCCACTTTAATGAAGAACTTCAGTGAATTTCAACCTCcatattgtggcggctctgggttgtgtgtgtggctgcctgcgggcatgtttctgttctcct

Function

NR:

description
PREDICTED: protein FAM98B

GO: NA

KEGG:

id description
K15434 FAM98B; protein FAM98B

RNA

RNA id representative length rna type GC content exon number start site end site
TU113122 False 893 TUCP 0.46 6 27815805 27819547
TU113127 False 1068 lncRNA 0.35 2 27820870 27822211
XM_022673084.1 True 1611 mRNA 0.48 8 27815832 27820689

Neighbor

gene id symbol gene type direction distance location
spred1 spred1 coding upstream 1897 27770793 ~ 27813908 (+)
c9h15orf41 cunh15orf41,c9h15orf41,cssa01h15orf41,clg19h15orf41,LOC105897278 coding upstream 309514 27428752 ~ 27506291 (+)
stxbp6 stxbp6 coding upstream 918737 26795808 ~ 26897068 (+)
LOC103023862 ddhd1 coding upstream 1099790 26693418 ~ 26716015 (+)
bmp4 bmp4 coding upstream 1202041 26604718 ~ 26613764 (+)
LOC103043868 atxn3,LOC108423524,LOC106596382,LOC107575702,LOC107683100 coding downstream 26466 27848677 ~ 27855382 (+)
LOC103042318 LOC103042318,LOC108423523 coding downstream 33530 27855741 ~ 27858741 (+)
ddx24 ddx24 coding downstream 37983 27860194 ~ 27869973 (+)
LOC103042002 LOC108423517 coding downstream 58817 27881028 ~ 27894983 (+)
LOC103041699 prima1,LOC108423434,LOC108270468 coding downstream 84615 27906826 ~ 27921173 (+)
G83972 NA non-coding upstream 110924 27704254 ~ 27704881 (+)
LOC107197843 NA non-coding upstream 200238 27604237 ~ 27615567 (+)
G83826 NA non-coding upstream 546574 27268958 ~ 27269231 (+)
G83824 NA non-coding upstream 571537 27243756 ~ 27244268 (+)
G83805 aqr,LOC108423414 non-coding upstream 675408 27133975 ~ 27140397 (+)
LOC111193235 LOC103459065 non-coding downstream 9766 27831977 ~ 27845966 (+)
G84001 NA non-coding downstream 100858 27923069 ~ 27923358 (+)
G84164 NA non-coding downstream 479522 28301733 ~ 28360989 (+)
LOC111193142 NA non-coding downstream 506564 28328775 ~ 28331408 (+)
G84219 NA non-coding downstream 551737 28373948 ~ 28374517 (+)
fermt2 fermt2 other upstream 1038317 26727823 ~ 26777488 (+)
spata7 NA other upstream 1416538 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 1488467 26321185 ~ 26327338 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other upstream 1510422 26275001 ~ 26305383 (+)
G83602 NA other upstream 1562203 26235498 ~ 26253602 (+)
LOC103044189 LOC108423527,LOC107677688 other downstream 2045 27824256 ~ 27831584 (+)
LOC107197841 NA other downstream 1148053 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 1177291 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 1218768 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 1221006 29043217 ~ 29043739 (+)

Expression


Co-expression Network