LOC103044189 (LOC108423527,LOC107677688)


Basic Information

Item Value
gene id LOC103044189
gene name LOC108423527,LOC107677688
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27824256 ~ 27831584 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113131
ATTTTGCACACTCATAGACTTCattacatgtgttttttttcccttcttcgAACAAAGGTTACTGGTGATGTTAGGAGGGCACATAAATGCATGACACTCAGGCCTTTAATATAAGACTTAgtagcagtattaaaagtagcACAGCAACTGTTCCTTTTCCATaagacacacatacatgcaaaaGTGCTGGAAAATGATGTTAGATAAACAATTTGATCTAATAAGTATTTTGTTCTGATAAGTTGTTCTTCAAAGTTTGAATTGTATGTGACTTTTATACTGGTTTCCTGATCAGTCTTATTTGAGTCTTTCCAGCTAGTGTTGCTGTCCTCTGTGTGGTATGCCATTAGCTTTGTACAGAGAATGTATCTAGTTGGCAAGGGTTTGCTTTTAGTCTAGCACCTGCTCActtccaggtttttttttctcacacagCGCTTTTAATTTCCCATTGAGATGTGTTGTTAGCCTGTTAACTCTAGCCTGAGGTAGTCTAGTTTGTTTGGGCTTGAACATTGGAGAGAAGAAATAGAGAAGAAATGGTAAAAGTAATACAGATTTCAATTTAATTCCCCAGCTTTTGCTACCCTTCTGTCAACACTGGCACAGGCAGATGCTGCATTCACGTGGTGAGTGAGTTTCCCATCCGGAAGCACCACATAAACTTCCTCTCAAATGGGATCCTCAAGTCAGGCTGCACTAACTGACTAAAATGTGAGGTAAAAGCTTTCCATTGTGACCGAGCATGcaaacaaaagtaaaatatcaaatattaatgtactttttgtatatatgtaaaaactACCAACAACATAtgtgttaaaaatacatatttcaaaAGTTTTTCTTATCTGCCTCGCAAACCACACGAACGCaaccaaaataaatgaatgacttTCACCTCAGAGAAATGTAAGACCTGACATGCACGTGAATGCAGCAAAGGCTGTGGTCACATGTTCTGGTTTTCTAAGCAAACTGTTGGTCAGTAACTAGCAGAGTCTGATAGTTATAGATCAAATATCAAAACCACCATATCTCCTGTAGTGGCAGTTGTGTTGTACTGCAACACAGCTTTGACTTGTCATATAAAGGCTAATGGGACTGTAAATTTGGGGCTATAGATAAAATGAGTCAGAATGTTGGGATTGACCTgctttacagccctgttttggCCATTTTTTGGTCATTATTTAACTATGAAAAGTTAAAGAGTTTTCCATTCTAGGAAACTTATAACTGGTAATTCATTCTGTCACAGCAACCACATGTACTGAACAGCTTGAATCTTAACCTTTGTAGTCACACCATAATAGTTAAATATTTCAGTGAAAGGCTCCAAGACTgttaataaaatacaagaaacaaaacacatttttaaaaagtacaaactGTTCAAGACAAAGCATAAAGAAGGCGGACGGTACCTTTTTAATTCCGTTTGTCAATGTCTCAGTCCATAGTGAATATTCATTGTATCCTCAATGAATAGAACAATAGGACTGTCTGTCTTTAAGTGTTCTGGTTGAGGCAGGTGCCTTCCTCTGTCTTTTTGTTGTGTTAGGAGTAGATGGACCAGTAGATGATGTTGAAAAGGGTGTACGCTCCTGGAAAGATCACCCTTGAGTACTTGTCTATGGCATGGGTGTCTATCCAGATGTTGACGTAGCCTCTTGAGCTTTTCACTGGTCTGGTGGATTGACTTTCTGCTATTGTAAACTGGGCCAACATCCTCTCCTGCCTCCCTCCGTTCTCTGGCATTCCATAGTTCCCTGTGGTGTTTTGCTCCATGTCACTGTAGCCAGTGGTCATCATCATGTCCTCGTCTGGGTTCGCTATACCACACGTACAGGGCAACTAGAGAGTAAGAGCATTAACAAGATCAACAGGTGTATTTTGATGGTTAATTAACATCAGATATCAGAAAATAGTAGCATTAATTAAAAGTGCTGTATACAATTCAGGAGAACAACTCTTAATATTTGATCTCAGCTATGAAACACACCATCCCTACAATACTCTTTCAAAAGCTTCATGTATAAATTCATGCGTATTGTGGGTTAGAAAAGAATGCCGCTGCTAAGCAAACCTGTTGGGATTCTCTAACAACAAACATTCACAAATGGCACAAAACAG
>XM_007257383.3
agaactgcagcagtATAGAAACATTAACTTTAACTCTGGACTGAGCTCTGTTAGTGTGAGGGACTGCAGCTCTGAGCAGCGCTGGTTCTCCTGATGGCTGCGCTGGGGGAAGCTGATGGTCGGAGGCTGAAGCAGGAGATCAGTGAGTGCGTGGATCAGTGCAGGGAGAAGCTGCACGCGCTCAGTCAGGGGATCTGGAGCAGACCGGAGCTCGCCTATCAGGAGAAGCACAGTCATGACCTGCTGGTGGCTTTGTTCTCTGAGGTCGGCGGCTGGACTGTGGAGCCCAGCTTCGTTGTAGACACCGCTTTCCGGGCGACGTGGTGCCGCAGTGTTGGTGAAACCCGCCGGCCGGTGAATGTGGGTTTCCTGTGTGAGTATGACGCGCTGCCTGCTCTGGGACACGCGTGCGGTCATAACCTGATCGCAGAGGCTGGTGTAGGGGCAGCACTCGGCCTGAAGGGGGCGCTAGAGAACCAGCCACACATTCCTGTGAAGATAACAGTTCTGGGGACTCCTGCTGAAGAAGATAGAGGAGGAAAGATAGACCTGATTAAGGCTGGAGCTTTTGCTGACATGGATGTTGTGTTCATGGCTCATCCTGCCCAGGAGGATAAAGCCTTCAGCCCCTGCATTGCCATAACCAActgcaaTGTAAAGTACCGTGGGAAAGCCTCTCATGCTGCTGCTTATCCGTGGGAGGGTGTGAATGCTCTGGATGCTGCTGTGCTTGCCTACAGCAGCTTGTCCGTGCTGAGACAGCAGCTGAAGCCTGACTGGAGACTGCATGGCATTATTAGGCATGGAGGGACAAAGCCTAACATTATTCCAGACTACACAGAGATGGAGTATTATATACGCACTCCACTGCTGAAAAACCTTTCTGACCTCAAAGATAAAGTAGAGGCGTGCTTCCACTCCGCTGCCCTCGCAACTGGCTGTCAAGTGGAAATAAATTATCCAAATCCAGCCTATTCCAATATTCTTCAAAACACCATCTTGGAAAAACTCTATGAAGAGAATGGCAGCTCCGTGGGCATGAAGTTTAATAAGGATTCCAGCAATTTTTCTGGCTCCACAGATTTTGGCAATGTGTCTTTTGTTGTCCCTGGTATACATCCTTTCTTTTACATTGGGACTGATGCACTAAACCACACACCTGAGTACACAGTAGCTGCTGGCTCAGAGAAAGCACAGATGTACACACTGAGGACAGCCAAAGCTCTGGCCATGACTGCTGCTGATGTGCTTCTGGATCCAGCTCTGCTCAAGCAGGTCAAAGATGAGTTCATAGTGGCCAAACAAACACAGGAGTAAAACACCAGCTGAGGCGTTCACTCCACATACAGATTTTACTGAATCAGACTCAGGCATTCCTGTGATGATCCATGTTCTTATATCACGCAGACTCTagtagaggcaaaaaatatctgtgaTTCGTCCTTTATGTAGCTCTATGTCTTAATCATGCTGCTAGTCTTTATTTGGTCTTAATCTTTCGAAGTGACCAAGTTTGTGTTTCATATGGGCCAGAAGAAAGTGTTTGATTGCACTGAAATATCTGtcagttttttgtttactacataatatgaacacacaaactgtccctttaaCTGTCAAACATTTTTATGGGCCAATAGAGATTatccaaaattacctaaaataaactaagaaaaaatacattgactttcattgaaagttagCAAAAGTtatctctttcctgtaaagtttctgtttggaagatacatgtttttaattggacagcaatTATATTTCATACATCATATtataaatcatgttttaaaaGGTACACATATGTTTAATGTACGAGTATGTGTGAGTAACTATCATTTGcatttgagccaaaaaaaacatttaagaaaggGCTTTACTCATCCAGGAGCTTGAGGCCTTGCCATTAATTGAATCgtattttttaaaccaaatcAAGTGTCCTTATTATacctttaaagttttaaaggttctttactGTGCTCTGGCTTTACATTCTAAATTGTATATACTGCAATACTCAAATTCTAAATCTCCAATAAATTCCAACAATGTTCCAATAAAGTTTATGGAGTCAATTTTGCACACTCA

Function

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit rho-1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113131 True 2136 lncRNA 0.38 1 27829449 27831584
XM_007257383.3 False 2103 mRNA 0.44 7 27824256 27829462

Neighbor

gene id symbol gene type direction distance location
spred1 spred1 coding upstream 10348 27770793 ~ 27813908 (+)
c9h15orf41 cunh15orf41,c9h15orf41,cssa01h15orf41,clg19h15orf41,LOC105897278 coding upstream 317965 27428752 ~ 27506291 (+)
stxbp6 stxbp6 coding upstream 927188 26795808 ~ 26897068 (+)
LOC103023862 ddhd1 coding upstream 1108241 26693418 ~ 26716015 (+)
bmp4 bmp4 coding upstream 1210492 26604718 ~ 26613764 (+)
LOC103043868 atxn3,LOC108423524,LOC106596382,LOC107575702,LOC107683100 coding downstream 17093 27848677 ~ 27855382 (+)
LOC103042318 LOC103042318,LOC108423523 coding downstream 24157 27855741 ~ 27858741 (+)
ddx24 ddx24 coding downstream 28610 27860194 ~ 27869973 (+)
LOC103042002 LOC108423517 coding downstream 49444 27881028 ~ 27894983 (+)
LOC103041699 prima1,LOC108423434,LOC108270468 coding downstream 75242 27906826 ~ 27921173 (+)
G83972 NA non-coding upstream 119375 27704254 ~ 27704881 (+)
LOC107197843 NA non-coding upstream 208689 27604237 ~ 27615567 (+)
G83826 NA non-coding upstream 555025 27268958 ~ 27269231 (+)
G83824 NA non-coding upstream 579988 27243756 ~ 27244268 (+)
G83805 aqr,LOC108423414 non-coding upstream 683859 27133975 ~ 27140397 (+)
LOC111193235 LOC103459065 non-coding downstream 393 27831977 ~ 27845966 (+)
G84001 NA non-coding downstream 91485 27923069 ~ 27923358 (+)
G84164 NA non-coding downstream 470149 28301733 ~ 28360989 (+)
LOC111193142 NA non-coding downstream 497191 28328775 ~ 28331408 (+)
G84219 NA non-coding downstream 542364 28373948 ~ 28374517 (+)
fam98b NA other upstream 2045 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 1046768 26727823 ~ 26777488 (+)
spata7 NA other upstream 1424989 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 1496918 26321185 ~ 26327338 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other upstream 1518873 26275001 ~ 26305383 (+)
LOC107197841 NA other downstream 1138680 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 1167918 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 1209395 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 1211633 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 1240307 29071891 ~ 29078898 (+)

Expression


Co-expression Network