LOC111193235 (LOC103459065)


Basic Information

Item Value
gene id LOC111193235
gene name LOC103459065
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27831977 ~ 27845966 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113132
GGGACCACCTTTCCTTAGATCATTataggaagtgtgtgtgtagacttACTCTCTCTCGTAGCTTCCTCTCTCTGCGTTCCTGCACAGTGGTCAGATAGTTGACTGCAGCATATTCTATTACTGAGAGGAAGACGAACACAAAACTGACCCACAGGTAAATATCCACTGCTTTGATGTAGGAAACACGTGGCATAGAGGCGTTGACCCCAGTGATGATAGTGGACATTGTAAGAACTGTAGTGATACCTGAAAAAGAGCAAATAAAAGATT
>XR_002650374.1
GCGTTCCTGCACAGTGGTCAGATAGTTGACTGCAGCATATTCTATTACTGAGAGGAAGACGAACACAAAACTGACCCACAGGAACCCTCagcactaggagggtgaagacgaTGCCTCCtgactgatgcagcatcactaggctGAGGCTGCCAACATGCTCAGAGGAAGGTGTGAATGCCTGGATATCCCAAGATGCCTGTGCAGCACAGCATCaactaggagtgatgagaggaagaAATGACATCAACCCACCCTTAATAGAGTCTCCAGCTTGTGACCCCTCTGGTAAGGTGACATCCCGGCCACACCCATAAGGTAGGTACAGAGGAGCAGGACTACAGCATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113132 False 270 lncRNA 0.43 1 27831977 27832246
XR_002650374.1 True 346 lncRNA 0.51 3 27832050 27845966

Neighbor

gene id symbol gene type direction distance location
spred1 spred1 coding upstream 18069 27770793 ~ 27813908 (+)
c9h15orf41 cunh15orf41,c9h15orf41,cssa01h15orf41,clg19h15orf41,LOC105897278 coding upstream 325686 27428752 ~ 27506291 (+)
stxbp6 stxbp6 coding upstream 934909 26795808 ~ 26897068 (+)
LOC103023862 ddhd1 coding upstream 1115962 26693418 ~ 26716015 (+)
bmp4 bmp4 coding upstream 1218213 26604718 ~ 26613764 (+)
LOC103043868 atxn3,LOC108423524,LOC106596382,LOC107575702,LOC107683100 coding downstream 2711 27848677 ~ 27855382 (+)
LOC103042318 LOC103042318,LOC108423523 coding downstream 9775 27855741 ~ 27858741 (+)
ddx24 ddx24 coding downstream 14228 27860194 ~ 27869973 (+)
LOC103042002 LOC108423517 coding downstream 35062 27881028 ~ 27894983 (+)
LOC103041699 prima1,LOC108423434,LOC108270468 coding downstream 60860 27906826 ~ 27921173 (+)
G83972 NA non-coding upstream 127096 27704254 ~ 27704881 (+)
LOC107197843 NA non-coding upstream 216410 27604237 ~ 27615567 (+)
G83826 NA non-coding upstream 562746 27268958 ~ 27269231 (+)
G83824 NA non-coding upstream 587709 27243756 ~ 27244268 (+)
G83805 aqr,LOC108423414 non-coding upstream 691580 27133975 ~ 27140397 (+)
G84001 NA non-coding downstream 77103 27923069 ~ 27923358 (+)
G84164 NA non-coding downstream 455767 28301733 ~ 28360989 (+)
LOC111193142 NA non-coding downstream 482809 28328775 ~ 28331408 (+)
G84219 NA non-coding downstream 527982 28373948 ~ 28374517 (+)
G84264 NA non-coding downstream 741430 28587396 ~ 28587954 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 393 27824256 ~ 27831584 (+)
fam98b NA other upstream 9766 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 1054489 26727823 ~ 26777488 (+)
spata7 NA other upstream 1432710 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 1504639 26321185 ~ 26327338 (+)
LOC107197841 NA other downstream 1124298 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 1153536 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 1195013 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 1197251 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 1225925 29071891 ~ 29078898 (+)

Expression


Co-expression Network