LOC103043566 (LOC108423527,LOC108270165,LOC100330554,LOC107677688,LOC103153288,LOC103458816,LOC106945627,LOC103355980,LOC102293757)
Chromosome Information
Item |
Value |
chromosome id |
NC_035905.1 |
NCBI id |
CM008308.1
|
chromosome length |
42966623 |
location |
27830628 ~ 27848444 (-) |
genome version |
Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
Sequence
>TU113207
TTTGCTATCTAAATGTACCACAGGACTTCACCATGACTCTGTATCTGAGACATTACTGGAAAGATGAGCGTCTTTCTTTCCCAAGCACCAACAACCAGAGCATGACCTTCGACAGCAGACTGGTGAAGAAGATCTGGGTGCCAGACATGTTCTTTGTTCACTCAAAAAGATCTTTCATCCATGACACTACGACAGACAACGTGATGCTGCGTGTTTATCCTGACGGAAACGTGCTCTACAGTTTGAGAGTAACAGTCACCGCCATGTGTAATATGGACCTGAGCCGTTTTCCTCTGGACACACAGACCTGTTCACTGGAGATAGAGAGCTACGCATATACTGATGATGACCTCATGCTGTATTGGAAGAAAGGTAACGAGTCTCTGAACACGGATGACAGGATCTCACTCTCTCAGTTTCTCATTCAGAAGTTTCACACAACTACTAAGCTGGCTTTCTACAGCAGCACAGGTTGGTACAACAGGTTGTACATCCATTTCACCCTTCGGCGTCACATCTTCTTCTTCCTGCTGCAGACGTACTTCCCTGCCACGCTGATGGTCATGCTGTCTTGGGTGTCCTTCTGGATTGATCGCAGGGCTGTGCCTGCTAGAGTACCTTTAGGTAGGGTGGGGTGCTGGCGATATC
>XM_007257381.3
GCTTACTTCAACATCATCACTTAttccacaaatacacacaaattctGGAAAATTTACCTAAAAGATTGTAATATGCATACTCCATCCTAAATCGTGCAGTCACCATAACTAGAAACATCCaccattttttgttattgtcattgctactttagttaatgctttaaaaatattggaCTCGTAGTCTACAACTAAGGGAGAGagatgttaaaaaatgtaatataaggcTTTTGATGTTCTTGGTCCATATGGCCGTACCCACAAAAATTCTTTTCTAGGCTTCTTTTCATACTTTCTATTTCTAGTTCAAGAGCACCTTGCACATCTTACAGATCTGCCTTTGGATATTTTGAGGCCTAATTTAGCACAGCACTGCCTGGACTGTAGGTGTTCTCAGGGCAAAGAGTGCTGCAACTATGTGCTCAGCAGTTTACTTAATGCCTACAaatgtttatatgattttttaggtgttattttgtttctttgatGTTGAATTTGATTATTCTGTCTCCAGAACACAACTAGTATACAACAAGGCTGGAATGCTTGATAGATACGTCCAGCAGATGGTGCTATACACAAGAAATTCATGGTTGTAATTCAGTCTACAGAAACAGCTGCTGTATTCACGCTGCacataaagaataataaaactgGCAGATAACTTTAAACCTATAGCATAAACACAGACTGAACATAAACTACAGCTTAGCTTACTTCAGGATTTTAGCAATTACTGTAGAAAGGTATGGACAGCACagcatctctcaaaagtgaagcaaCCGCAGGTCATGCGATATGTAGCTTTGGCTATTCCAATAACAATGCAACAGCCCATTTTACAGTCTGGACTCCAGCCTGGGTGTAAATTTGACTTGTTTGGCTTAATTTCTATAGAATGAAAGGGAATGAACCACAGTGTTATGTTCTTTTGTGGTTACTGTGTTAATATCCAATATTTAAACTGCTATTTCAATTCTAtataaggaaaatataaaaatttagtGTCTGTGTGACTCCCCTCTCCTGTCATCAGTGTGTCATTACCTACAGCCTATTTAAAGCAAATAGTCTAAAATGCAAAGTTTAGTATCTTAAGGACATTAGGCTTAACAGGTACAGGAAACCTCAATGTTATGTGACATGGGTTATGGGCCTACAATATACTAGTAAATGCAAGTGTTATTGAggatatcagaaaaaaatagaatctTTCCTAGTATAAATTACAGTATAGAAAATGTAGGAGCTTTAATTAGAAAAAGTTAGTTGCTGATGTAGCTTGTGGCATTTTAGGCTAAATCTACTTGctataaatgtttttgtaattatGAGTTTAAGTGGATGAAAGCTGGACATCCAGACAAAAGCATTCTTAACAATGCCAGCATGGgtaagcttggtcatactgggtATCTAGCTTGCTTTGGTTGATCATACTTGTTGACcaaataaactattaaacttAAACATACCCTCTACCTTAGTCAAAATATAGGGTGGTAAACCAGCTTTACACTCGTGAGCTGGCCATGTTGTTTTTCAGCAGGAATGGGTACCGAAATTGTGCCATTTTGCACACTGGTTTAGGCTTATGCTTTGTGAACTTTACTGCCTGAAAAGACAGTATAAACTAAATGTTATCAATAATGTATAACCATAAGAACCACtgcttctcattttctattcaGAATTTCATTACTGCATTCCCACTTACTAGAATTAGGTCACTAAGATCACAAATCCCAGCATcaaacacacacgctcacacgttTTTAACTCCAATTTTTAAAGTGACTCTTCATAGAACTAACCCAAATCTACGATGATGGCCACAGCtggtttttactgttttttatctctGTAGGTGTGTGCACTATAAGTTACTAAGCCACTGTTTTGCAAGTGCTAGATTTGTGTTAGATTTGTAAACGCTTGTATTACAGACTGCTGTAATGTACAGTCATGTGCAGAATGCAAATGTCACAGAGGACTTAAGTCCATCCAAGCGCGATTGTAAAGCCCAGTATTTTTAGAGAAATTCTTCCCAAATGCAGCCAGATTGGATAATCTGAGCGCACTGAAAGGGGGGCCAGCGTCTCGCAGTTAgtgctgctgtctgtctgtgcaGCATCCTCCATCCTCGTGACTGACCTCACAGTGAAATGCAGAGCAGTGGATCATTAGGAGAATTGGTTCGGGGCGGTGCAGAGCAGAGCACGGCACATTCACCACTGGAGGGATCAAATCTGTGCCATCTGACGCTCAAGGATTTATGGGTTTAGTCAAAATTGCTTTTCCCAGTGGGGAGATTAAGCACTGAGGGATGTTTACAGTGAAGGCAGAGCTGTGTGTTCTTCTTGAGCTCCAGTGCTAAAAAAGAATGTCCTCCTCGGCTGTGTGTTCAGGAGCTGCTCCTGCCCGTGAGGTGTGCGGAATCTGACCGGAGGTGCTGTGTAAGGGTATGTGCACCATGCAGGCAGATGCTGTAGTCCTGCTCCTCTGTACCTACCTTATGGGTGTGGCCGGGATGTCACCTTACCAGAGGGGTCACAAGCTGGAGACCTATAAGCAAAGCAGaactcggagagaaacagaaatggTGCAAGGAGGAGTTCAGAAGTCTGGCAGTCCCATCTTCAGAAGAAGTCCAGATATGACAAAATCACCCATGACAAAATCTGAGCAACTATTAAGGATAGATGACCATGACTTTACAATGAGGCCAGCGTTTGGAgGACCTCCTATACCTGTGGGAGTAGATGTTCAGGTAGAGAGCCTTGACACTATCTCTGAAGTTGATATGGACTTCACCATGACTCTGTATCTGAGACATTACTGGAAAGATGAGCGTCTTTCTTTCCCAAGCACCAACAACCAGAGCATGACCTTCGACAGCAGACTGGTGAAGAAGATCTGGGTGCCAGACATGTTCTTTGTTCACTCAAAAAGATCTTTCATCCATGACACTACGACAGACAACGTGATGCTGCGTGTTTATCCTGACGGAAACGTGCTCTACAGTTTGAGAGTAACAGTCACCGCCATGTGTAATATGGACCTGAGCCGTTTTCCTCTGGACACACAGACCTGTTCACTGGAGATAGAGAGCTACGCATATACTGATGATGACCTCATGCTGTATTGGAAGAAAGGTAACGAGTCTCTGAACACGGATGACAGGATCTCACTCTCTCAGTTTCTCATTCAGAAGTTTCACACAACTACTAAGCTGGCTTTCTACAGCAGCACAGGTTGGTACAACAGGTTGTACATCCATTTCACCCTTCGGCGTCACATCTTCTTCTTCCTGCTGCAGACGTACTTCCCTGCCACGCTGATGGTCATGCTGTCTTGGGTGTCCTTCTGGATTGATCGCAGGGCTGTGCCTGCTAGAGTACCTTTAGGTATCACTACAGTTCTTACAATGTCCACTATCATCACTGGGGTCAACGCCTCTATGCCACGTGTTTCCTACATCAAAGCAGTGGATATTTACCTGTGGGTCAGTTTTGTGTTCGTCTTCCTCTCAGTAATAGAATATGCTGCAGTCAACTATCTGACCACTGTGCAGGAACGCAGAGAGAGGAAGCTACGAGAGAGATTGCCCTGTACGTGTGGTATAGCGAACCCAGACGAGGACATGATGATGACCACTGGCTACAGTGACATGGAGCAAAACACCACAGGGAACTATGGAATGCCAGAGAACGGAGGGAGGCAGGAGAGGATGTTGGCCCAGTTTACAATAGCAGAAAGTCAATCCACCAGACCAGTGAAAAGCTCAAGAGGCTACGTCAACATCTGGATAGACACCCATGCCATAGACAAGTACTCAAGGGTGATCTTTCCAGGAGCGTACACCCTTTTCAACATCATCTACTGGTCCATCTACTCCTAACACAACAAAAAGACAGAGGAAGGCACCTGCCTCAACCAGAACACTTAAAGACAGACAGTCCTATTGTTCTATTCATTGAGGATACAATGAATATTCACTATGGACTGAGACATTGACAAACGGAATTAAAAAGGTACCGTCCGCCTTCTTTATGCTTTGTCTTGAACagtttgtactttttaaaaatgtgttttgtttcttgtattttattaacAGTCTTGGAGCCTTTCACTGAAATATTTAACTATTATGGTGTGACTACAAAGGTTAAGATTCAAGCTGTTCAGTACATGTGGTTGCTGTGACAGAATGAATTACCAGTTATAAGTTTCCTAGAATGGAAAACTCTTTAACTTTTCATAGTTAAATAATGACCAAAAA
>XM_022673085.1
GCTTACTTCAACATCATCACTTAttccacaaatacacacaaattctGGAAAATTTACCTAAAAGATTGTAATATGCATACTCCATCCTAAATCGTGCAGTCACCATAACTAGAAACATCCaccattttttgttattgtcattgctactttagttaatgctttaaaaatattggaCTCGTAGTCTACAACTAAGGGAGAGagatgttaaaaaatgtaatataaggcTTTTGATGTTCTTGGCTTCTTTTCATACTTTCTATTTCTAGTTCAAGAGCACCTTGCACATCTTACAGATCTGCCTTTGGATATTTTGAGGCCTAATTTAGCACAGCACTGCCTGGACTGTAGGTGTTCTCAGGGCAAAGAGTGCTGCAACTATGTGCTCAGCAGTTTACTTAATGCCTACAaatgtttatatgattttttaggtgttattttgtttctttgatGTTGAATTTGATTATTCTGTCTCCAGAACACAACTAGTATACAACAAGGCTGGAATGCTTGATAGATACGTCCAGCAGATGGTGCTATACACAAGAAATTCATGGTTGTAATTCAGTCTACAGAAACAGCTGCTGTATTCACGCTGCacataaagaataataaaactgGCAGATAACTTTAAACCTATAGCATAAACACAGACTGAACATAAACTACAGCTTAGCTTACTTCAGGATTTTAGCAATTACTGTAGAAAGGTATGGACAGCACagcatctctcaaaagtgaagcaaCCGCAGGTCATGCGATATGTAGCTTTGGCTATTCCAATAACAATGCAACAGCCCATTTTACAGTCTGGACTCCAGCCTGGGTGTAAATTTGACTTGTTTGGCTTAATTTCTATAGAATGAAAGGGAATGAACCACAGTGTTATGTTCTTTTGTGGTTACTGTGTTAATATCCAATATTTAAACTGCTATTTCAATTCTAtataaggaaaatataaaaatttagtGTCTGTGTGACTCCCCTCTCCTGTCATCAGTGTGTCATTACCTACAGCCTATTTAAAGCAAATAGTCTAAAATGCAAAGTTTAGTATCTTAAGGACATTAGGCTTAACAGGTACAGGAAACCTCAATGTTATGTGACATGGGTTATGGGCCTACAATATACTAGTAAATGCAAGTGTTATTGAggatatcagaaaaaaatagaatctTTCCTAGTATAAATTACAGTATAGAAAATGTAGGAGCTTTAATTAGAAAAAGTTAGTTGCTGATGTAGCTTGTGGCATTTTAGGCTAAATCTACTTGctataaatgtttttgtaattatGAGTTTAAGTGGATGAAAGCTGGACATCCAGACAAAAGCATTCTTAACAATGCCAGCATGGgtaagcttggtcatactgggtATCTAGCTTGCTTTGGTTGATCATACTTGTTGACcaaataaactattaaacttAAACATACCCTCTACCTTAGTCAAAATATAGGGTGGTAAACCAGCTTTACACTCGTGAGCTGGCCATGTTGTTTTTCAGCAGGAATGGGTACCGAAATTGTGCCATTTTGCACACTGGTTTAGGCTTATGCTTTGTGAACTTTACTGCCTGAAAAGACAGTATAAACTAAATGTTATCAATAATGTATAACCATAAGAACCACtgcttctcattttctattcaGAATTTCATTACTGCATTCCCACTTACTAGAATTAGGTCACTAAGATCACAAATCCCAGCATcaaacacacacgctcacacgttTTTAACTCCAATTTTTAAAGTGACTCTTCATAGAACTAACCCAAATCTACGATGATGGCCACAGCtggtttttactgttttttatctctGTAGGTGTGTGCACTATAAGTTACTAAGCCACTGTTTTGCAAGTGCTAGATTTGTGTTAGATTTGTAAACGCTTGTATTACAGACTGCTGTAATGTACAGTCATGTGCAGAATGCAAATGTCACAGAGGACTTAAGTCCATCCAAGCGCGATTGTAAAGCCCAGTATTTTTAGAGAAATTCTTCCCAAATGCAGCCAGATTGGATAATCTGAGCGCACTGAAAGGGGGGCCAGCGTCTCGCAGTTAgtgctgctgtctgtctgtgcaGCATCCTCCATCCTCGTGACTGACCTCACAGTGAAATGCAGAGCAGTGGATCATTAGGAGAATTGGTTCGGGGCGGTGCAGAGCAGAGCACGGCACATTCACCACTGGAGGGATCAAATCTGTGCCATCTGACGCTCAAGGATTTATGGGTTTAGTCAAAATTGCTTTTCCCAGTGGGGAGATTAAGCACTGAGGGATGTTTACAGTGAAGGCAGAGCTGTGTGTTCTTCTTGAGCTCCAGTGCTAAAAAAGAATGTCCTCCTCGGCTGTGTGTTCAGGAGCTGCTCCTGCCCGTGAGGTGTGCGGAATCTGACCGGAGGTGCTGTGTAAGGGTATGTGCACCATGCAGGCAGATGCTGTAGTCCTGCTCCTCTGTACCTACCTTATGGGTGTGGCCGGGATGTCACCTTACCAGAGGGGTCACAAGCTGGAGACCTATAAGCAAAGCAGaactcggagagaaacagaaatggTGCAAGGAGGAGTTCAGAAGTCTGGCAGTCCCATCTTCAGAAGAAGTCCAGATATGACAAAATCACCCATGACAAAATCTGAGCAACTATTAAGGATAGATGACCATGACTTTACAATGAGGCCAGCGTTTGGAgGACCTCCTATACCTGTGGGAGTAGATGTTCAGGTAGAGAGCCTTGACACTATCTCTGAAGTTGATATGGACTTCACCATGACTCTGTATCTGAGACATTACTGGAAAGATGAGCGTCTTTCTTTCCCAAGCACCAACAACCAGAGCATGACCTTCGACAGCAGACTGGTGAAGAAGATCTGGGTGCCAGACATGTTCTTTGTTCACTCAAAAAGATCTTTCATCCATGACACTACGACAGACAACGTGATGCTGCGTGTTTATCCTGACGGAAACGTGCTCTACAGTTTGAGAGTAACAGTCACCGCCATGTGTAATATGGACCTGAGCCGTTTTCCTCTGGACACACAGACCTGTTCACTGGAGATAGAGAGCTACGCATATACTGATGATGACCTCATGCTGTATTGGAAGAAAGGTAACGAGTCTCTGAACACGGATGACAGGATCTCACTCTCTCAGTTTCTCATTCAGAAGTTTCACACAACTACTAAGCTGGCTTTCTACAGCAGCACAGGTTGGTACAACAGGTTGTACATCCATTTCACCCTTCGGCGTCACATCTTCTTCTTCCTGCTGCAGACGTACTTCCCTGCCACGCTGATGGTCATGCTGTCTTGGGTGTCCTTCTGGATTGATCGCAGGGCTGTGCCTGCTAGAGTACCTTTAGGTATCACTACAGTTCTTACAATGTCCACTATCATCACTGGGGTCAACGCCTCTATGCCACGTGTTTCCTACATCAAAGCAGTGGATATTTACCTGTGGGTCAGTTTTGTGTTCGTCTTCCTCTCAGTAATAGAATATGCTGCAGTCAACTATCTGACCACTGTGCAGGAACGCAGAGAGAGGAAGCTACGAGAGAGATTGCCCTGTACGTGTGGTATAGCGAACCCAGACGAGGACATGATGATGACCACTGGCTACAGTGACATGGAGCAAAACACCACAGGGAACTATGGAATGCCAGAGAACGGAGGGAGGCAGGAGAGGATGTTGGCCCAGTTTACAATAGCAGAAAGTCAATCCACCAGACCAGTGAAAAGCTCAAGAGGCTACGTCAACATCTGGATAGACACCCATGCCATAGACAAGTACTCAAGGGTGATCTTTCCAGGAGCGTACACCCTTTTCAACATCATCTACTGGTCCATCTACTCCTAACACAACAAAAAGACAGAGGAAGGCACCTGCCTCAACCAGAACACTTAAAGACAGACAGTCCTATTGTTCTATTCATTGAGGATACAATGAATATTCACTATGGACTGAGACATTGACAAACGGAATTAAAAAGGTACCGTCCGCCTTCTTTATGCTTTGTCTTGAACagtttgtactttttaaaaatgtgttttgtttcttgtattttattaacAGTCTTGGAGCCTTTCACTGAAATATTTAACTATTATGGTGTGACTACAAAGGTTAAGATTCAAGCTGTTCAGTACATGTGGTTGCTGTGACAGAATGAATTACCAGTTATAAGTTTCCTAGAATGGAAAACTCTTTAACTTTTCATAGTTAAATAATGACCAAAAA
Function
NR:
description |
PREDICTED: gamma-aminobutyric acid receptor subunit rho-1-like |
GO: NA
KEGG:
id |
description |
K05190
|
GABRR; gamma-aminobutyric acid receptor subunit rho |
RNA
RNA id |
representative |
length |
rna type |
GC content |
exon number |
start site |
end site |
TU113207 |
False |
648 |
TUCP |
0.48 |
4 |
27834782 |
27838795 |
XM_007257381.3 |
True |
4279 |
mRNA |
0.41 |
10 |
27830628 |
27848444 |
XM_022673085.1 |
False |
4243 |
mRNA |
0.41 |
11 |
27830628 |
27848444 |
Neighbor
gene id |
symbol |
gene type |
direction |
distance |
location |
LOC111193234 |
NA
|
coding |
downstream |
195221 |
27632645 ~ 27635407 (-) |
meis2 |
meis2
|
coding |
downstream |
221986 |
27526742 ~ 27608642 (-) |
dph6 |
dph6,LOC106512485
|
coding |
downstream |
401827 |
27148597 ~ 27428801 (-) |
aqr |
aqr
|
coding |
downstream |
690149 |
27079341 ~ 27140479 (-) |
gjd2 |
gjd2
|
coding |
downstream |
766794 |
27060524 ~ 27063834 (-) |
otub2 |
otub2,ddx24
|
coding |
upstream |
17101 |
27865545 ~ 27873706 (-) |
LOC103043263 |
NA
|
coding |
upstream |
26704 |
27875148 ~ 27880315 (-) |
fam181a |
fam181a
|
coding |
upstream |
46511 |
27894955 ~ 27897940 (-) |
unc79 |
NA
|
coding |
upstream |
80110 |
27928554 ~ 27997121 (-) |
LOC103039744 |
NA
|
coding |
upstream |
224415 |
28072859 ~ 28079529 (-) |
G84045 |
NA
|
non-coding |
downstream |
10764 |
27815850 ~ 27819864 (-) |
G83973 |
NA
|
non-coding |
downstream |
125740 |
27704226 ~ 27704888 (-) |
G83957 |
NA
|
non-coding |
downstream |
215920 |
27613245 ~ 27614708 (-) |
G83950 |
NA
|
non-coding |
downstream |
253962 |
27524295 ~ 27576666 (-) |
G83951 |
NA
|
non-coding |
downstream |
307766 |
27522095 ~ 27522862 (-) |
G84063 |
NA
|
non-coding |
upstream |
4912 |
27853356 ~ 27855384 (-) |
G84064 |
LOC103042318,LOC108423523
|
non-coding |
upstream |
7831 |
27856275 ~ 27859160 (-) |
G84083 |
NA
|
non-coding |
upstream |
150140 |
27998584 ~ 28005722 (-) |
G84109 |
NA
|
non-coding |
upstream |
211573 |
28060017 ~ 28114357 (-) |
G84107 |
LOC108423515
|
non-coding |
upstream |
218772 |
28067216 ~ 28072498 (-) |
cga |
cga
|
other |
downstream |
1360465 |
26434472 ~ 26470163 (-) |
G83612 |
NA
|
other |
downstream |
1826943 |
25992499 ~ 26003685 (-) |
LOC103040243 |
tdh,LOC103040243,LOC108441731,LOC107561940,LOC107723287,LOC107589050,LOC107701506,LOC107746115,LOC105018021,LOC104922441
|
other |
downstream |
2789574 |
25034004 ~ 25041054 (-) |
LOC103026430 |
LOC108428707,LOC108269919,LOC107102228,LOC103379330,LOC101162185
|
other |
downstream |
3194747 |
24630879 ~ 24635881 (-) |
cunh6orf183 |
zbtb24
|
other |
downstream |
3214012 |
24588941 ~ 24616616 (-) |
G84215 |
NA
|
other |
upstream |
496145 |
28344589 ~ 28356545 (-) |
rps6kl1 |
rps6kl1
|
other |
upstream |
827154 |
28675598 ~ 28694982 (-) |
G84392 |
NA
|
other |
upstream |
1227032 |
29075476 ~ 29076115 (-) |
G84579 |
nol10
|
other |
upstream |
1960085 |
29808529 ~ 29810277 (-) |
hpcal1 |
hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378,LOC106607246
|
other |
upstream |
2010533 |
29858977 ~ 29930575 (-) |
Expression