G84083


Basic Information

Item Value
gene id G84083
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27998584 ~ 28005722 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113250
AGGACATACCATTTCAAGACGTCTTTAATGGtgcacacacttatacactggATACTTCGTTTGGATTAAAGAATTTGGATTAAAATGCTTTTAGGCCTGAGAGGATGGGTGAGAGCTCTGGCACGAGCAAAGCTACCCCAACAAGATCACAGGTCAAACATCCACTGCAAACCACCTAAGGACAATATTGGACCCGGGCAAACAGTGTTTACCATGTCCGTCTTTGCACTTGCTCTTCTGGTCCCGGCGGGTTGGATCATGCACCATATTCCAGTTTACAAGCaaagaccacctcctgaagtctGACCTCATGGCTTGTCTTCAACACTTCTCCTGAAATATATACCATACAGTATACAACAGTTATTgttgactttaataaataatgttaatagtACAGAATACTGACTGGTGTTTTCCTCTGTGAAAAGAGATGATTATTATCGGTTACATTAGTAGTACTACCGGTACATAACGGGTTTGGTGCCAGAATACATAAAAATGGTTTACTGATGAGTAGTGAGGTTTACAAACACAAGACATGACAGTATTGTTTGGTTAATGCTCCATTATCACTCATTTTTAATTGGCATGACGATTATTATTGatagtgtaatgtgatgtattggtttaaaa
>TU113252
AGGACATACCATTTCAAGACGTCTTTAATGGtgcacacacttatacactggATACTTCGTTTGGATTAAAGAATTTGGATTAAAATGCTTTTAGGCCTGAGAGGATGGGTGAGAGCTCTGGCACGAGCAAAGCTACCCCAACAAGATCACAGGTCAAACATCCACTGCAAACCACCTAAGGACAATATTGGACCCGGGCAAACAGTGTTTACCATGTCCGTCTTTGCACTTGCTCTTCTGGTCCCGGCGGGTTGGATCATGCACCATATTCCAGTTTACAAGCaaagaccacctcctgaagtctGACCTCATGGCTTGTCTTCAACACTTCTCCTGAAATATATACCATACAGTATACAACAGTTATTgttgactttaataaataatgttaatagtACAGAATACTGACTGGTGTTTTCCTCTGTGAAAAGAGATGATTATTATCGGTTACATTAGTAGTACTACCGGTACATAACGGGTTTGGTGCCAGAATACATAAAAATGGTTTACTGATGAGTAGTGAGGTTTACAAACACAAGACATGACAGTATTGTTTGGTTAATGCTCCATTATCACTCATTTTTAATTGGCATGACGATTATTATTGatagtgtaatgtgatgtattggtttaaaa
>TU113253
AGGACATACCATTTCAAGACGTCTTTAATGGtgcacacacttatacactggATACTTCGTTTGGATTAAAGAATTTGGATTAAAATGCTTTTAGGCCTGAGAGGATGGGTGAGAGCTCTGGCACGAGCAAAGCTACCCCAACAAGATCACAGGTCAAACATCCACTGCAAACCACCTAAGGACAATATTGGACCCGGGCAAACAGTGTTTACCATGTCCGTCTTTGCACTTGCTCTTCTGGTCCCGGCGGGTTGGATCATGCACCATATTCCAGTTTACAAGCaaagaccacctcctgaagtctGACCTCATGGCTTGTCTTCAACACTTCTCCTGAAATATATACCATACAGTATACAACAGTTATTgttgactttaataaataatgttaatagtACAGAATACTGACTGGTGTTTTCCTCTGTGAAAAGAGATGATTATTATCGGTTACATTAGTAGTACTACCGGTACATAACGGGTTTGGTGCCAGAATACATAAAAATGGTTTACTGATGAGTAGTGAGGTTTACAAACACAAGACATGACAGTATTGTTTGGTTAATGCTCCATTATCACTCATTTTTAATTGGCATGACGATTATTATTGatagtgtaatgtgatgtattggtttaaaa

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113250 True 636 lncRNA 0.39 2 27998584 28005722
TU113252 False 636 lncRNA 0.39 3 27998584 28005722
TU113253 False 636 lncRNA 0.39 3 27998584 28005722

Neighbor

gene id symbol gene type direction distance location
unc79 NA coding downstream 1463 27928554 ~ 27997121 (-)
fam181a fam181a coding downstream 100644 27894955 ~ 27897940 (-)
LOC103043263 NA coding downstream 118269 27875148 ~ 27880315 (-)
otub2 otub2,ddx24 coding downstream 124878 27865545 ~ 27873706 (-)
LOC111193234 NA coding downstream 363177 27632645 ~ 27635407 (-)
LOC103039744 NA coding upstream 67137 28072859 ~ 28079529 (-)
LOC103037016 LOC103037016 coding upstream 80662 28086384 ~ 28090632 (-)
zc2hc1c NA coding upstream 108851 28114573 ~ 28119005 (-)
erg28 cunh14orf1,gb:ev754742,c9h14orf1,LOC103034519,LOC107724257,LOC107554785,LOC103358042 coding upstream 172059 28177781 ~ 28180984 (-)
tgfb3 tgfb3,LOC106590795 coding upstream 262315 28268037 ~ 28293987 (-)
G84064 LOC103042318,LOC108423523 non-coding downstream 139424 27856275 ~ 27859160 (-)
G84063 NA non-coding downstream 143200 27853356 ~ 27855384 (-)
G84045 NA non-coding downstream 178720 27815850 ~ 27819864 (-)
G83973 NA non-coding downstream 293696 27704226 ~ 27704888 (-)
G83957 NA non-coding downstream 383876 27613245 ~ 27614708 (-)
G84109 NA non-coding upstream 54295 28060017 ~ 28114357 (-)
G84107 LOC108423515 non-coding upstream 61494 28067216 ~ 28072498 (-)
G84197 NA non-coding upstream 260448 28266170 ~ 28267487 (-)
G84229 NA non-coding upstream 415262 28420984 ~ 28424692 (-)
G84263 NA non-coding upstream 562749 28568471 ~ 28568719 (-)
LOC103043566 LOC108423527,LOC108270165,LOC100330554,LOC107677688,LOC103153288,LOC103458816,LOC106945627,LOC103355980,LOC102293757 other downstream 150140 27830628 ~ 27848444 (-)
cga cga other downstream 1528421 26434472 ~ 26470163 (-)
G83612 NA other downstream 1994899 25992499 ~ 26003685 (-)
LOC103040243 tdh,LOC103040243,LOC108441731,LOC107561940,LOC107723287,LOC107589050,LOC107701506,LOC107746115,LOC105018021,LOC104922441 other downstream 2957530 25034004 ~ 25041054 (-)
LOC103026430 LOC108428707,LOC108269919,LOC107102228,LOC103379330,LOC101162185 other downstream 3362703 24630879 ~ 24635881 (-)
G84215 NA other upstream 338867 28344589 ~ 28356545 (-)
rps6kl1 rps6kl1 other upstream 669876 28675598 ~ 28694982 (-)
G84392 NA other upstream 1069754 29075476 ~ 29076115 (-)
G84579 nol10 other upstream 1802807 29808529 ~ 29810277 (-)
hpcal1 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378,LOC106607246 other upstream 1853255 29858977 ~ 29930575 (-)

Expression


Co-expression Network